Capsella rubella (pink shepherd's-purse): 17879375
Help
Entry
17879375 CDS
T02984
Name
(RefSeq) E3 ubiquitin-protein ligase UPL3
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
17879375
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
crb04121
]
17879375
Enzymes [BR:
crb01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
17879375
Ubiquitin system [BR:
crb04121
]
Ubiquitin ligases (E3)
HECT type E3
17879375
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HECT
ARM_ARMC5
HEAT_EZ
Htt_N-HEAT_1
PDS5
Motif
Other DBs
NCBI-GeneID:
17879375
NCBI-ProteinID:
XP_006282429
UniProt:
R0F123
LinkDB
All DBs
Position
Unknown
AA seq
1880 aa
AA seq
DB search
METRSRKRAEATSTAPSSSSSSPPSSSGPTTRSKRARLSSSSLAPSSSTTTTTTRSRSSR
SAAPMDTSTDSSGFRRGGRGNRGNDNTNSDKGKEKEHDVRIRERERERDRAREQLNMDAA
AAAARSADEDDDNDSEDGNAGFMHPNMSSASSALQGLLRKLGAGLDDLLPSSGIGSASSS
HLNGRMKKILSGLRSEGEEGKQVEALTQLCEMLSIGTEDSLSTFSVDSFVPVLVGLLNHE
SNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVSCLVARLLTIEYMDLAEQSLQALKKIS
QEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDASDYVMEAVPLLTNL
LQYHDSKVLEYASICLTRIAEAFAPYPEKLDELCNHGLVTQAASLISTSNSGGGQASLSV
STYTGLIRLLSTCASGSPLGFRTLLLLGISGILKDILLGSGDSANASVSPALSRPADQIF
EIVNLANELLPPLPEGVISLPTSTNTFVKGSSQKKSCPSSSGKQEDALKISPREKLLGDQ
PELLRQFGLDLLPVLVQIYGSSVNGTIRHKCLSVIGKLMYFSSSEMIQSLIGDTNISSFL
AGVLAWKDPQVLVPALQVAEILMEKLPETFSKVFVREGVVHAVDQLVLVGKPSHASPTDK
ENDCVPGSARSRRYRRRSSNANSDGNQSEETKNSASLNIGANHNSLDTPTASFMLRETVS
SCAKAFKDKYFRSDGGDLDVGVTDDLLHLKNLCTKLTAGIDDHKVKGKGKSKASGACLGD
FSASKEEYLIGVISEILGELSKGDGVSTFEFIGSGVVAALLNYFSCGYFSKEKISELNFP
KLRQEGLRRFKAFLEVALPFDGNEGKVPPMTVLIQKLQNALSSLERFPVVLSHPSRSLSG
SARLSSGLSALAHPLKLRLCRAPGEKTLRDYSSNIVLIDPLASMAAVEEFLWPRVQRSES
GLKPAAPAGNLEAEALPSGAGVSSPSSSTPASTTRRHSSRSRSAINIGDTSKKEPVHEKG
TSSLKGKGKGVMKPAQADKGPQTRSSAQRRAVLDKDTQMKAPSGDSSSEDEELDISPVDI
DDALVIEEDDISDDEDDDNEDVLDDSLPMCTPDKVHDVKLADSVDDESLATSGRPMNAAS
GGTSGTAAARGSDSTDAGVGSTYGSRGALSFAAAAMAGLGAASGRGIRGSRDLHGRTLYR
SSDEPSKLIFTAGGKQLSRHLTIYQAVQRQLMLDEDDDDRFGGSDLISSDGSRFNDIYTI
MYQRPDSQVNRLSVGGASSTTPSKSSKSATTNSSVESQSHRASLLDSILQGELPCDLEKS
NSTYNVLALLRVLEGLNQLCPRLRAQTVSDRFAEGKITSLDDLSTTAAKVPLEEFVNSKL
TPKLARQIQDALALCSGSLPSWCYQLTRACPFLFPFQTRRQYFYSTAFGLSRALNRLQQQ
QGADGSGSTNEREMRIGRLQRQKVRVSRNRILDSAAKVMEMYSSQKAVLEVEYFGEVGTG
LGPTLEFYTLLSHDLQKVSLGMWRSNSGDKVSMQIDGEEIEDGKSSAARDRDIVQAPLGL
FPRPWPSTADVSEGGQFHKVTEYFRLLGRVMAKALQDGRLLDVPLSTAFYKLILGQELDL
HDIVLFDAELGKTLQELRVLVARKHYLEAVGGDNNSTVSDLCLRGSRIEDLCLDFTLPGY
PEYILRPGDEIVDITNLEEYISLVVDATVKKGVARQIEAFRSGFNQVFDITSLQIFTPSE
LDYLLCGRRELWEAETLAEHIKFDHGYTAKSPAIINLLEIMGELTADQQRAFCQFVTGAP
RLPPGGLAVLNPKLTIVRKHSSTSSAAVNGAGALETADDDLPSVMTCANYLKLPPYSTKE
IMYKKLLYAINEGQGSFDLS
NT seq
5643 nt
NT seq
+upstream
nt +downstream
nt
atggaaactcggagccgcaagcgggcggaggcgacctcaactgccccatcttcttcttct
tcctctcctccctcttcctctggtcccaccacccgcagcaaacgcgctcgtctttcttct
tcctcacttgccccttcctcctccaccaccaccaccaccacccgctcccgctcttctcgc
tctgccgctcccatggacacctccactgattcttctggctttcgccgaggcggacgaggt
aacaggggaaacgataacaccaattccgacaagggtaaggagaaggaacatgacgttcgg
attagggagagagagagggaaagagaccgagccagggaacaactcaacatggatgccgcc
gccgccgctgctaggagtgctgacgaggatgacgacaatgacagtgaggatggcaacgcc
ggatttatgcatcctaacatgagctctgccagcagtgctttacaaggcttgctcagaaag
cttggagctggcttggatgacttgcttccttcttccggtatcggctctgcttcttcttcc
cacttgaacggaaggatgaagaagattctctccggcttgcgctctgaaggagaagagggt
aaacaggtcgaggctttgacccagctctgcgagatgttatccatcgggaccgaagactca
cttagcactttctctgttgattccttcgtgcctgttcttgttggtctcctcaaccatgaa
agcaatcccgacattatgcttcttgctgccagggctcttacccatctatgcgatgtcttg
ccatcttcttgtgctgccgttgtacattacggggcagtttcatgcttagtggccagattg
ctaaccattgagtacatggacttggccgagcagtctctgcaagctctcaaaaagatatct
caggagcacccaactgcctgtttgcgagctggtgctcttatggctgtgctctcgtatctg
gatttcttctccactggtgtacagcgtgtagcactatctactgctgctaacatgtgcaag
aaactaccttctgatgcatctgattatgttatggaagctgtaccattactgacaaaccta
cttcagtatcatgattcgaaggttttggaatatgcttctatatgtctgactcggattgct
gaagcatttgcaccttatcctgagaaactggatgaattatgcaaccatggcctggtgact
caagctgcgtctcttatctccacgagcaattcaggaggtgggcaagcatctcttagtgtg
tcaacttacacggggttaatccgattactttctacctgcgcaagcgggtcacctcttgga
tttaggacattacttcttctcggtattagtggcattcttaaggatattctgttgggttct
ggtgactctgctaatgcatctgtttccccagcactgagccggcctgcagatcagattttt
gaaatagtcaacctagcgaatgagctcctccctccattgccagaaggagttatctctctt
cctactagcacaaacacttttgtgaaaggttcaagccaaaagaaatcttgtccaagttct
tcaggaaaacaagaagatgctctgaaaatttcacctagagaaaaattacttggtgatcaa
cctgaacttctgcggcaatttggattggatcttcttccagttttagtgcagatctatggt
tctagtgtcaatggtactattcgccataaatgtctctcagtcattggaaagctgatgtat
tttagcagttcagaaatgatacaatccctaattggcgacacgaatatttccagcttcttg
gctggtgtcttggcatggaaagatccacaggtcttggttcctgctctgcaagttgctgaa
attttgatggaaaagcttcctgaaacattctcgaaagtgtttgtgagggaaggggtggtc
catgctgtagatcaacttgtcttggttggtaaaccttctcatgcgtcacctactgataaa
gaaaatgactgtgtgcccggatctgcacgatctaggcgttatagacggcgaagtagtaat
gccaattctgatggaaatcagtcagaagagactaagaattctgcatcacttaacataggt
gcaaaccataattctttggacactcctaccgccagcttcatgctaagggagaccgttagt
tcctgtgccaaagcattcaaagacaagtacttccggtctgatggtggggatcttgatgtt
ggagttacagatgatctcttacatctgaagaatctttgcactaagctaaccgctggtata
gatgatcataaagtgaaaggaaagggtaaatctaaagcgtctggggcatgccttggcgat
ttctctgctagcaaggaagagtacttgattggtgtcatctctgagatacttggcgagcta
agtaaaggggatggtgtctcaacttttgagtttattggaagtggtgtggttgcagcattg
cttaactatttttcttgtgggtacttttccaaagagaagatctccgaacttaattttccc
aaacttcgccaggagggtctcagaaggttcaaagcctttctagaagtcgcacttccattt
gatggtaatgagggaaaggtccctcctatgacagttttgattcagaaacttcaaaatgct
ttatcgtcactggaacgctttcctgttgtccttagccacccctcaagatcactaagtgga
agtgctcggctctcctcaggactgagtgcgttagcacatcctttaaagttgcgattatgt
cgtgcacctggagagaagacactacgtgattactcctctaatattgtacttatagatcca
ttggcaagcatggcagcagtggaggaatttctctggccccgagttcaacgtagtgaatct
ggtctgaagccagcagcacctgctggaaatctagaggcagaggcgttacctagcggtgct
ggtgtatcgtcaccatcttcgtcaactccagcttccaccactcgtcgtcattcttctaga
tctagatctgcaattaacataggtgatacctcaaagaaagaacctgtgcatgagaaaggt
acaagttcattgaaaggaaaaggtaaaggcgtgatgaagccagctcaagcagataaggga
cctcaaacaaggagcagtgctcaaaggagagctgtccttgacaaagacactcaaatgaaa
gcgcctagcggagactccagttctgaggatgaggaattagatatatccccagtcgacatt
gatgatgccttggtgattgaagaagatgacatttctgatgatgaagatgatgataatgaa
gatgttttggatgacagtcttcctatgtgcacgcctgataaagtgcatgatgtaaaattg
gcggactcagtggatgatgagagtctggcaaccagcggccgaccaatgaatgcagcttcg
ggaggcaccagtggaacagcagcagcaaggggatctgattctactgatgctggtgttggt
agtacttatggttctaggggtgcactctcctttgctgctgcagccatggctgggcttgga
gctgccagtggtagaggtatcaggggaagtagggacttgcatggacgtaccctatatcga
agttcagatgagccctctaagctgatatttactgcaggaggaaagcaacttagtaggcat
ttgacgatttatcaggctgtacagcgacaacttatgctagatgaagacgacgatgacagg
tttggtggcagtgatctcatctcaagtgatggaagcagattcaatgacatttacaccatc
atgtaccagaggccagacagccaagtgaataggttgtctgttggtggagcaagttctacc
acaccatcaaaatcctcaaagtctgctactaccaattccagtgtagaatctcagtcacat
agggcatctcttttggatagtatattacaaggggagcttccatgcgaccttgagaaatca
aactctacatataatgttctggcactgttacgtgtattagagggtttaaatcagctttgt
cctcgtttaagagcccaaactgtttctgatcgtttcgcagagggtaaaattacaagtcta
gatgatctgagtacaactgctgctaaggttcctcttgaagaatttgtcaatagcaaactt
acacccaaattagcccgacaaatccaggatgcgcttgctttgtgcagtggaagtcttccc
tcttggtgctaccaattgactagagcatgcccttttttgtttccgtttcaaacccggaga
cagtacttctactcaactgcgtttgggttgtctcgtgcattgaatcgtttgcagcagcag
caaggtgctgacggcagtgggtctacaaatgaacgagagatgagaatagggagattgcag
cgccagaaagtccgagtatcccgaaataggatattagattctgctgccaaagttatggag
atgtattctagccaaaaagctgtgcttgaagtagaatatttcggtgaagttggtactggt
ctaggccctacacttgagttttacacacttctaagccatgatctgcaaaaggtttctctt
gggatgtggagatcaaattctggtgacaaggtttctatgcaaattgatggagaggagatt
gaagacggaaagtcatctgcagctagggacagagatatagttcaggccccacttgggttg
tttcctcgaccttggccctcaacagctgacgtatctgaaggtggtcagtttcataaagtc
actgaatatttccgccttttagggcgtgtgatggccaaagcacttcaagatggacggcta
ttggacgtcccattgagtactgcattttataagcttattcttggtcaagagcttgatttg
catgatatcgtattatttgatgctgaacttggtaagactttgcaagagctgcgtgttctt
gttgcccgcaagcactatctggaggctgtaggtggggacaataacagcacggtttctgat
ctatgtttacgtggatcccgcatagaagatctctgcttggacttcacgctacctggctat
cctgagtacattctgagacctggagatgaaattgttgatatcactaatcttgaggagtat
atttcccttgttgttgatgctactgtcaagaaaggagtcgctcggcagatcgaagccttc
agatctggatttaatcaggtgtttgacataacatctctacaaatattcaccccttctgag
ctggattacttgctctgtggtcgtagagagttgtgggaggctgagactcttgctgaacat
atcaaatttgatcacgggtatactgccaaaagtccagcaattattaacttactggagatc
atgggagaacttacagcagatcagcagagggctttctgccagtttgttactggagctcct
aggcttcctcctggtggcttagctgttctgaacccaaagctcacgattgtgagaaagcac
tcatcgacatcaagtgcagcagtcaatggagcaggggctttggagacagcagatgatgat
ttgcccagtgtcatgacttgcgcaaactaccttaagctccctccttattcgacaaaggaa
atcatgtacaagaaactgctctacgccatcaacgaaggacaaggatcgttcgacctctca
taa
DBGET
integrated database retrieval system
