KEGG   Capsella rubella (pink shepherd's-purse): 17879569
Entry
17879569          CDS       T02984                                 
Name
(RefSeq) helicase and polymerase-containing protein TEBICHI isoform X2
  KO
K02349  DNA polymerase theta [EC:2.7.7.7]
Organism
crb  Capsella rubella (pink shepherd's-purse)
Brite
KEGG Orthology (KO) [BR:crb00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:crb03400]
    17879569
Enzymes [BR:crb01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     17879569
DNA repair and recombination proteins [BR:crb03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   DNA polymerases
    17879569
SSDB
Motif
Pfam: DNA_pol_A POLQ_helical HTH_61 DEAD Helicase_C ResIII Helicase_dom4_arc HHH_5
Other DBs
NCBI-GeneID: 17879569
NCBI-ProteinID: XP_006282845
UniProt: R0GX53
LinkDB
Position
Unknown
AA seq 2162 aa
MDSDSSKSRIDQFYVSKKRKHSSPNLKSGRNEKNVKVTGERSPGDKGTLDNYLKASLDDK
STTNSGLQARQEAFTRKLDLEVSASSVHENISLRVPKPVRAATSNGVEGCLNQNGSQIFH
KEGVAITETHATDGLLCSSQKDNSDLRDFTTGFLSLYCSGMQSIIGSPPHQKACELKRQS
SSSSLAQDTKISHKRRCDSQIIPALDELAYPLGSKPESLASVADKRDKSFSDSTKKIPSN
ELVEIPMGLRKCTKAPESSTHLNECHTPGLAIKSCPVGTPKSGSGSSMFSPGDAFWNEAI
QVADGLAIPIENSRSVEVKDGGEYGTILSCSNKTDHCSEKLKRSLDIDESRVKDKEAIGF
SKVVEKHGRDFKKEVSPLPVKNLELLFQDKKTNGGNRERFTSFDQNNSTLGISRISESVF
VDDKGCETLDIANNVEANNILIGRVYPEPEENKDILCEENHHERSGSMIGNIRKSVDSSE
SEESHTPSSSHRNKDGLNLSTWLPSEVCSVYNKKGIFKLYPWQVECLQVDGVLQKRNLVY
CASTSAGKSFVAEVLMLRRVITTGKMALLVLPYVSICAEKAEHLEALLEPLGKHVRSYYG
NQGGGTLPKDTSVAVCTIEKANSLINRLLEEGRLSELGIIVIDELHMVGDQHRGYLLELM
LTKLRYAAGEGSSESSSGESSGNSSGKADPAHGLQIVGMSATMPNVGAVADWLQAALYQT
EFRPVPLEEYIKVGSTIYNKKMEIVRTIPKAADMGGKDPDHVVELCNEVVQEGNSVLIFC
SSRKGCESTARHISKFIKKFPIDVDGENSEFMDIRSAIDALQRSPSGVDPVLEETLPFGV
AYHHAGLTVEEREIVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPMIGRDFIDGTR
YKQMSGRAGRTGIDTKGESVLICKPREVKRIMALLNETCPPLQSCLSEDKNGMTHAILEV
VAGGIVQSAKDIHRYVRCTLLNSTKPFQDVVKSAQDSLRWLCHRKFLEWNEETKLYTTTP
LGRGSFGSSLCPEESLIVLDDLLRAREGLVMASDLHLVYLVTPINVGVEPNWELYYERFM
ELSPLEQSVGNRVGVVEPFLMRMAHGATVRTRNRPHDVNKNLRGEFDNRHGSTSMKTLSD
EQMLRVCKRFFVALILSKLVQEASVTEVCEAFKVARGMVQALQENAGRFSSMVSVFCERL
GWHDLEGLVAKFQNRVSFGVRAEIVELTSIPYIKGSRARALYKAGLRTSQSIAEASIPEI
VKALFESSAWGAEGAGQKRMHLGLAKKIKNGARKIVLEKAEEARAAAFSAFKSLGLDVHE
LSKPLPSAPARSPSGQETTEKDISRGSVGPNELQHVPGKSSTEEHIECENFDTDNHREKP
RKVLGATLGVSSEVNLNRRLPNFQPIGTTVGTNGLNAVSILSSDIFPIPVYNDREIKTKD
NVDQHLTRNSHIPLSNKDGTGEKGPITAGNISGGFDSFLELWESAGEFFFDIHHNKLQDL
NSRISYEIHGIAVCWNSSPVYYVNLNKDLPNLECVEKQKLIEDAVVGKNEVFATHNMFDV
IKSRWNRISKIMGNVSTRKFTWNLKVQIQVLKSPAISIQRCPRLNLAEGIMDLELVDGSW
LMLPPLRISHTIDMSIVTWILWPDEERHSYPNIDKEVKKRLSPEAAEAASRSGRWRNQIR
RVAHNGCCRRVAQTRALCSALWKILVSEELLEALTTTEMPLVNVLADMELWGIGVDIEGC
LGARNILRDKLRSLEKKAFELAGMTFSLHNPADIANVLFGQLKLPIPENQSKGKLHPSTD
KHCLDLLRNEHPVVPIIKEHRTLAKLLNCTLGSICSLAKLRLSTQRYTLHGRWLQTSTAT
GRLSIEEPNLQSVEHEVEFLLDKNGKDVNSNADRCKINARDFFVPTQDNWLLLTADYSQI
ELRLMAHFSRDSSLVSQLSQPEGDVFTMIAAKWTGKVKDSVSPHDRDQTKRLIYGILYGM
GANRLAEQLECSSDEAKEKIRSFKNSFPAVTSWLNETISFCQEKGYIQTLKGRRRFLSKI
KFGNAKEKSKAQRQAVNSMCQGSAADIIKIAMINIYSAITDDVDSATSSPSTESRFHMLK
GRCRILLQVHDELVLEVDPSYVKEAATLLQTSMENAVSLVVPLHVKLKVGKTWGSLEPFQ
AD
NT seq 6489 nt   +upstreamnt  +downstreamnt
atggactcggattcctctaaatcgcggattgatcagttttatgtttcgaagaagaggaaa
cattcttcaccaaatttgaagtctgggagaaatgagaaaaatgtgaaggtgacaggagaa
aggtctcctggagacaaaggcactttggacaattacttgaaagcctctctggacgacaaa
agcactaccaatagtgggttgcaggcaaggcaagaagcgtttacaagaaaattggatttg
gaggtttctgcttcgtctgttcatgaaaatatatccctccgcgtgcctaaacctgtaagg
gccgcaacttctaatggagttgaagggtgtttgaaccagaatggatctcaaatttttcat
aaagaaggtgttgctataactgaaactcatgcaacagatggtttgctctgttctagccag
aaagataattcagacctaagagactttaccactggtttcttgtccttgtattgtagtgga
atgcagtctattattggttcacctccacatcagaaggcatgtgaactgaagcgtcaaagc
agctcatcatcacttgcccaagatactaaaatttctcacaagaggcgctgtgattcccaa
attataccagctctagatgaacttgcatatcctctggggagtaagcctgaatcactcgct
agtgttgctgataaaagagataaatctttttcagactctacaaagaagattccgagcaat
gaacttgttgaaattccaatgggcttgagaaagtgtaccaaggcaccagaatcgtctact
catctaaatgaatgccacactcctggattagccattaaatcatgtcctgttggaacccca
aagtcaggaagtggcagctcaatgttctcacctggagatgctttctggaatgaagcaatt
caagttgctgacggtttggcaattccaattgagaactctcgttccgtagaagttaaagat
ggaggtgaatatggaactattctttcatgcagcaacaaaacagatcattgcagtgaaaag
ttaaagaggagtttagatatagatgaaagcagggtaaaggataaagaagccattggtttt
tcaaaggttgtagagaagcatgggagagattttaagaaagaagtgtcgccgcttcctgtc
aagaaccttgaacttttgtttcaagataagaaaacaaatggaggtaaccgagagcgattt
acttcatttgatcaaaataatagtactctaggaatcagcaggatctcggaatctgttttt
gttgatgataaaggatgtgaaactcttgatattgcaaataatgttgaggcaaataatatc
ttgataggcagggtgtatccagaacccgaagaaaataaagatatattgtgcgaggaaaat
catcatgaaagatctggttctatgataggcaacattaggaaatcagttgattctagtgaa
tctgaagaaagtcatactccttcaagctctcatcgtaacaaagatggtttaaatcttagc
acttggcttccctcagaagtttgcagtgtatacaacaagaaaggaatatttaaactctat
ccttggcaggtcgagtgtcttcaggttgatggtgttttgcagaaaaggaatctggtatat
tgtgcttctacaagtgctggtaaaagttttgttgcggaagtcttgatgctacgtcgggtc
ataacaactggaaaaatggcattgcttgtgctaccttatgtatccatttgcgctgagaag
gcagaacaccttgaggcccttcttgaaccacttggtaagcatgttcgtagttactatgga
aatcagggtggtggaacacttcctaaagacacttctgtggctgtctgcacgattgagaag
gccaactctttgataaatcgcttgcttgaagagggtcgtttgtcagaacttgggataata
gttatagatgagctacatatggtgggtgaccaacataggggttatcttttggaacttatg
ttgacgaaacttcgttatgctgctggtgaaggcagttcagaatcaagtagtggtgagagt
tcagggaatagcagtggcaaggctgatcctgctcatggcctacaaattgtgggtatgagt
gctacaatgccgaatgttggagcagttgctgactggcttcaagcagctttatatcaaaca
gagttccgaccagttccgctagaggagtatattaaagttggtagcactatttacaataaa
aagatggaaattgtgaggactataccaaaagctgctgatatgggaggaaaagacccggac
catgtagttgagctttgtaacgaggttgttcaagaaggcaattcagtgctgatattttgt
tcgagtcgaaaaggatgcgaatcaactgctaggcatatttcaaagttcattaaaaagttt
cccatagacgttgatggtgaaaatagtgagtttatggatatcagatctgctattgatgcc
ctgcaaaggtctccgtctggagtagatcctgtattggaagaaactcttccctttggggtt
gcctatcatcatgctggtcttacagtagaagaaagagagatagttgagacctgttaccgt
aagggtctcgtacgtgtcttaacagctacatccactttggcggctggggttaatctgcct
gcaaggagggtaatttttcgacaaccaatgattggccgtgattttattgacggaacaagg
tacaagcaaatgtctgggagagctgggcggactgggattgatacaaaaggagaaagtgtg
ttgatttgcaaacctagagaagtcaagcgaataatggctcttcttaatgaaacctgccca
ccactgcagtcttgtttatctgaggataaaaatggaatgactcatgcaattctagaagtt
gtggcaggtggaattgttcagagtgccaaagatattcatcgctatgttaggtgtacactt
ctcaattctacaaagccttttcaagatgtggtcaaatcagctcaggattcgcttcggtgg
ctgtgccacaggaaatttcttgagtggaatgaagagacaaagttatacactacaacaccc
cttggacgtggatcttttggcagttcactctgccccgaggagtcacttatagttctggat
gatcttttacgagcacgtgaaggactagttatggcatctgatttgcatttggtctactta
gtcacaccaatcaatgttggtgttgaaccaaactgggaattgtattatgaacggttcatg
gaactgtctcctttagagcagtctgttggcaatagagttggagtggtcgaacctttcctg
atgcgcatggcacatggtgcaacagttcgcactagaaacagaccacatgatgtaaataaa
aatttgcgtggagaatttgacaatcggcatggttcaacaagcatgaagacgctttcagat
gaacaaatgcttcgagtgtgcaagcgattttttgttgctcttattttgtcaaaattagtt
caggaagcttctgtgactgaggtctgtgaagcctttaaagtggctagaggtatggttcaa
gcgctacaggagaatgctggaaggttttcttccatggtttcagtgttctgtgagaggctt
ggatggcatgatttggaaggcttagttgccaagttccagaaccgtgtttcatttggtgtc
agagctgagattgtcgaacttactagcattccatatataaagggttcaagagctagggcg
ttgtacaaagctggcttgcgtacatctcaatcgatagctgaagcatccatccctgaaatt
gtcaaagctctctttgaatcttcagcgtggggtgcagaaggtgcaggacaaaaaaggatg
cacctgggattagccaagaaaatcaagaatggggcacgcaaaattgttcttgagaaagca
gaagaggcgagggctgctgcattctctgcttttaagtcactcggtttggatgttcacgag
ctttcaaagcccttgccatctgctcctgctaggagtcccagtggacaagaaactactgaa
aaagacatttctagaggctctgttggtcccaatgaattacaacatgttccaggaaaatca
agcacagaggagcacatagaatgtgaaaactttgataccgataatcacagagaaaagcca
aggaaagtattaggtgctaccttaggggtttcatcagaagttaacttgaacagacgtctt
cctaattttcaacctataggaactacagtcggcactaatgggcttaatgctgttagtatt
ctttccagtgatattttccctatccctgtttacaatgacagagagataaaaactaaggac
aatgttgatcagcatttgactaggaattcgcatattcctttgagtaataaggatggtaca
ggtgaaaagggtccaataactgcaggaaatattagtggcggatttgattcattcctggaa
ctttgggaatctgctggcgaatttttcttcgatatccaccataataaactacaagatttg
aattcccgcatctcttatgagatacatggaattgctgtctgctggaatagctcccccgta
tactatgtcaatcttaataaagatcttcccaacctggaatgtgtagaaaaacaaaagctt
atcgaggatgcagttgttggaaagaatgaggtttttgctacccacaacatgtttgatgtt
ataaaatctaggtggaacagaatcagtaaaataatgggcaatgtaagtacgagaaagttc
acatggaatttgaaagtccagattcaggtgcttaagagtcctgctatatcaatccaaaga
tgccctcgcctgaatcttgcagaagggatcatggatcttgagttggttgatggatcttgg
ctaatgttgcctccgcttcgcataagccacaccattgacatgagtattgtgacatggatt
ctttggccagatgaggaaagacactcatatccaaacattgataaggaagtaaagaaaaga
ctatccccagaggcagctgaagctgctagtcgcagtggcaggtggaggaatcagatccga
agggttgcccacaatggctgctgcagacgggttgctcaaacgagagccctttgttcagct
ctttggaagatccttgtttctgaagaacttcttgaagcactgacaaccactgaaatgccg
ctggttaatgtccttgcagacatggagctttggggtataggcgtcgatatagaaggatgc
cttggggcacggaatatattgcgggataaactgcggtccctcgagaagaaagcatttgaa
ttggctggcatgacattttcgttgcacaacccagctgatattgcaaatgtgttgtttgga
cagttgaagttgcccataccggaaaaccaatctaaagggaaacttcatccaagtactgat
aagcactgcttggatcttttaaggaatgagcatcctgttgtcccaattatcaaagaacac
cgcactttggcaaagctcttaaattgtacacttggatcaatttgttcacttgctaaacta
cgcttgagcacgcaaaggtacactttgcatggccgctggcttcaaacatcaacagcaact
gggcggctttccatagaggagcctaatctccaatctgttgagcatgaagtagagttctta
ttggataaaaatggaaaggacgtaaattcaaatgctgatcgttgcaaaataaatgcacgt
gatttctttgttcctactcaggataattggttactcttgacggcagattattcacagata
gagttgcgacttatggcacacttttctagagattcctcgttggtttcacagcttagccag
ccagaaggtgatgtctttacaatgatagctgcaaaatggactggaaaagtcaaggattct
gttagtccacatgatagagatcagaccaaaagattgatctatggaatcctttacggaatg
ggtgcaaatagactcgcagaacagcttgagtgcagctcagatgaagccaaggagaaaatt
agaagctttaaaaattctttccctgcagtcacctcttggctaaacgaaacaatttcattt
tgccaggaaaaaggatatattcagactctcaagggaagaaggcggttcttgtcaaaaata
aaatttgggaatgccaaagagaaatctaaggctcaaaggcaagctgtaaattccatgtgc
cagggatctgctgctgatataatcaagattgcaatgataaacatctattctgcaattact
gatgatgtcgatagcgcaacatctagtccttcaactgaaagcaggtttcacatgttaaag
ggacgatgtcgaattcttctacaagtacatgacgaacttgtgctggaagttgatccttct
tatgtaaaagaagctgcaacattgctacaaaccagcatggaaaatgcggtttcacttgta
gtccctctacatgtgaaactaaaggttgggaaaacatggggctccttagaaccgtttcag
gctgattaa

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