Capsella rubella (pink shepherd's-purse): 17879989
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Entry
17879989 CDS
T02984
Name
(RefSeq) protein RRP6-like 2
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
17879989
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crb03019
]
17879989
Messenger RNA biogenesis [BR:
crb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
17879989
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
PMC2NT
Enc34_ssDNA-bd
Motif
Other DBs
NCBI-GeneID:
17879989
NCBI-ProteinID:
XP_006285759
UniProt:
R0F9K6
LinkDB
All DBs
Position
Unknown
AA seq
856 aa
AA seq
DB search
MSDGNMDVDDSPLSWKVKSLEAIVDGPFSKTLSKLSSSSRLIPASRDFHFYYNFDEFKRP
IDEIAGTSQSALETIGDSEQVWEKSMKFPGDVDEVDAEDWLCNVNDEFIERFDVSVDEFK
RIRKEEEEIGRPLAYDGNDDGFQMVYGKKKKPFGNVITGSAAGKNTYGGSVIDVKLAERE
RNSSGKAKVPFHVPTIKKPQEEYNILVNNANQPFEHVWLERSEDDQRVMHPLEKLSVVDF
VDKDVNEMEPVKPLPLEETPFKFIQEVKDLKELVAKLRSVEEFAVDLEHNQYRSFQGLTC
LMQISTRTEDYIVDTFKLRIHVGPYLREIFKDPKKKKVMHGADRDIIWLQRDFGIYVCNL
FDTGQASRVLNLERNSLEFLLQHFCGVTANKEYQNADWRIRPLPEEMTRYAREDTHYLLY
IYDVIRLELQRMAKLDEHTDSPLLEVYKRSYDVCTQLYEKELLTEDSYLHVYGLQAAGFN
AAQLAIVAGLCEWRDFIARAEDESTGYVLPNKVLLDIAKEMPLSVSKLRRMLKSKHPYIE
RNVDSVVSVIRQSVQNYAGFESAALSLKDASSGTIMDKNIEPITEKKDVYSGDLASPSLK
DNSLQVESTRGLNMVAASTTEGRGLGTGLFGSAKVSAAVRISKKPSSGLGALLGSAASKK
KFRTDEKVKEDVKLEQIRSSVNLAFPSFKEKVPDSNSAMPASVSREDGVTELKDDSEEAL
EIVGTSGRVSVPETGDIILLENGDGDGDGDAKEVEAEDEPMSLSELSTNFQKCFNSMKKS
NKAPKQTEFLNIEPFDYEAARKELKFGEGHKGRQAKKEAGAGQKKKGSGPEQSEFGQGKR
RQAFPASGNRSATFKS
NT seq
2571 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacggtaacatggacgtcgacgattcaccgctttcttggaaggtaaaatccctg
gaagcaatagtcgatggtcctttctcgaagaccctctcgaaactctcatcgtcttctcgt
ttgattccggcgagtagagatttccatttttactacaatttcgatgagttcaaacgccca
atcgacgagatagctggaacctcgcagtcggctcttgagacgatcggtgattccgagcag
gtttgggagaaatcgatgaagttccctggcgatgttgatgaagttgatgccgaggattgg
ctttgtaacgtgaatgatgaatttatcgagagatttgatgtttcggttgatgagtttaag
aggattcggaaggaagaagaggaaattggtcggcctttggcttacgatgggaatgatgat
gggtttcagatggtttatgggaagaagaaaaagccttttggtaatgtgattactggctcg
gcggcgggtaagaatacttacggtggttctgtgattgatgttaagttggctgagagggag
aggaattcatctggtaaggctaaagttcctttccatgtaccaaccataaagaagcctcaa
gaggagtataatatattggtgaacaacgcgaatcaaccctttgagcatgtttggttggag
aggagcgaggacgatcagcgagttatgcatccactggagaaactttcagtggttgacttc
gttgacaaagatgtaaacgagatggaacctgttaagccccttccattggaagagactccg
ttcaagtttattcaagaagtgaaagatctgaaagaattagttgccaaattgcgtagtgtt
gaagagtttgcggttgatctggagcataatcagtatcgatcttttcaaggattgacatgc
ttgatgcaaatttccaccagaacagaggattatatagttgatacatttaagctccgtatt
catgttggtccttacctaagggagatattcaaagaccctaaaaagaaaaaggtaatgcat
ggagcagatcgagatattatctggcttcaacgggatttcggcatatatgtctgcaatctc
tttgacacaggacaggcctcaagagtgctaaatttggagagaaatagcctggagtttctt
ttgcagcatttttgtggagttactgcaaacaaagaataccaaaatgcagactggagaata
cgaccccttccagaggaaatgacaagatatgcaagagaagatacccactaccttttgtac
atatatgatgtaatcagactagaactgcaaagaatggcgaagcttgacgagcatactgac
tctcctttgcttgaggtctacaagcggagttatgatgtgtgcacacaactatatgagaaa
gagctattaaccgaggattcatatcttcatgtctatgggcttcaagcagcgggcttcaat
gcagctcaacttgccattgttgcggggctctgtgaatggagagatttcattgcacgtgca
gaggatgagagtactggttatgtgttgccaaacaaagttctccttgatatagccaaggag
atgcctctcagtgttagcaaattgcgtcggatgttgaagtcaaagcatccttatatcgag
cggaatgttgattcggtggtcagtgtcatcaggcagtcagtgcaaaattatgcaggattc
gagtctgctgctctgtctttaaaagatgcgtcttctggaactataatggataagaatatt
gaacctattactgagaagaaagacgtttactcaggagatttagcttctccaagtttgaag
gataattctttgcaagttgagagtaccaggggcctcaatatggttgcagcaagtactact
gaagggagaggtttaggcaccggcttgtttggttctgctaaggtttctgcggcagttcgg
atatctaagaaaccaagcagtggtttaggagcattgctgggaagtgcagcctcgaagaag
aaatttcgaactgatgagaaggtgaaggaagatgtgaagcttgaacagataagatcatct
gtaaacctggcattcccttcgtttaaagaaaaagtccctgactcaaactcagctatgcca
gcctctgtttccagggaagatggtgtgacagagttgaaagatgattcagaagaagcctta
gaaattgttggtacttctggtagagtttcagtgcccgagactggtgatattatactattg
gaaaatggtgatggtgatggtgatggtgatgcgaaagaagttgaggctgaagatgaacca
atgtctctctcggagttgtccacaaactttcagaagtgctttaactcgatgaaaaagagc
aacaaggccccaaagcagactgagtttttaaacatagagccgtttgattatgaagcagca
aggaaagagttgaaatttggggaagggcacaagggaagacaagcaaagaaagaagctgga
gcaggtcagaagaagaagggttctggtccggagcagtcagagtttggtcaaggaaaacgt
cgtcaagcctttccggcatccgggaaccgaagtgcgacctttaaaagttag
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