Capsella rubella (pink shepherd's-purse): 17880293
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Entry
17880293 CDS
T02984
Name
(RefSeq) DNA-directed RNA polymerase II subunit 2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb03020
RNA polymerase
crb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
17880293
09124 Replication and repair
03420 Nucleotide excision repair
17880293
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
crb03021
]
17880293
03400 DNA repair and recombination proteins [BR:
crb03400
]
17880293
Enzymes [BR:
crb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
17880293
Transcription machinery [BR:
crb03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
17880293
DNA repair and recombination proteins [BR:
crb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
17880293
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
MRNIP
Motif
Other DBs
NCBI-GeneID:
17880293
NCBI-ProteinID:
XP_006285577
UniProt:
R0H1I6
LinkDB
All DBs
Position
Unknown
AA seq
1188 aa
AA seq
DB search
MEYNEYEPEPQYVDDDEDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVD
ESADIEIRPESQHNPGHQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNL
TYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLFQNSEKDLTEL
GECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVGEVRSMAENQNRPPS
TMFVRMLARASAKGGSSGQYIRCTLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADT
QMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYAKDILQKEMLPHVGVGE
HCETKKAYYFGYIVHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDV
RSYVQKCVDNGKEVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYA
STLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGS
AAYPILEFLEEWGTENFEEISPSVIPTATKIFVNGMWVGVHRDPDMLVKTLRRLRRRVDV
NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVDNQRLLIKKRDIYALQQRESAEEDGWHHL
VAKGFIEYIDTEEEETTMISMTISDLVQARLRPEEAYTENYTHCEIHPSLILGVCASIIP
FPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQL
PAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP
DRASTMGMRHGSYDKLDDDGLAPPGTRVTGEDVIIGKTTPISQDEAEGQSSRYTRRDHSI
SLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDM
PWTVEGVTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL
HKCGYQMRGFERMYNGHTGRPLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPA
EGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEVCGLIAIANLKKNSF
ECRGCKNKTDIVQVYIPYACKLLFQELMSMAIAPRMLTKHLKSAKGRQ
NT seq
3567 nt
NT seq
+upstream
nt +downstream
nt
atggagtataacgaatacgaacctgaacctcaatatgtagacgacgatgaagatgaggag
attactcaggaggacgcgtgggctgttatatctgcttatttcgaagagaaaggtctcgtt
cgtcaacagctcgattcatttgatgagtttatccagaatacaatgcaagaaattgttgat
gagtctgctgatatcgagatccgacctgaatctcagcacaatcctggccatcagtccgat
tttgcagagacaatctacaagattagctttggacagatttatctgagtaaacctatgatg
acagagtctgatggagagactgctaccctgtttcccaaggctgcgaggttgagaaacctc
acatattctgctcctttgtatgttgatgttactaagagagttataaagaaagggcatgat
ggtgaggaagtcactgagacacaggattttactaaagttttcattgggaaggttcccatc
atgctccggtccagttattgtaccttgtttcaaaactcggagaaagatctgacagagctt
ggagaatgtccttatgatcaggggggatacttcattattaatggcagtgaaaaggttctg
attgctcaggagaagatgagtacgaaccatgtttatgtgttcaagaagagacagccaaat
aagtatgcttatgttggtgaagtccgctctatggctgagaaccaaaataggcctccaagc
acaatgtttgtgcgtatgcttgctcgtgctagtgcaaaagggggttcatctggacaatat
attcggtgtactcttccatacatcagaacagaaattcctattatcatagtctttcgtgcg
ttgggatttgttgccgataaggacattttggaacacatctgctatgattttgcggacacg
caaatgatggagttactcaggccttccttggaagaagccttcgtgattcaaaatcagcag
gttgcacttgactatattgggaaacgtggtgcaactgttggtgtaaccaaggaaaaaagg
ataaagtatgcgaaagatattcttcagaaagaaatgcttcctcatgtaggagttggggaa
cattgtgagacaaagaaagcatactattttgggtatattgtacatcgattgctgctttgt
gctcttggccgaaggccagaagatgatagggatcattatggtaacaaaaggctggatctt
gccggtcctttacttggagggctgtttcgaatgcttttccgaaagctaacaagggatgtg
agatcttatgttcaaaagtgtgttgacaatggcaaagaagtcaatcttcaatttgccatt
aaggctaaaacaattacctctggcctgaaatattctcttgctactgggaactggggccag
gcaaacgctgctggcacaagagctggagtttctcaggttcttaatcggttgacttatgct
tcaactttgtcacatctgaggcgtctcaattctccaataggacgtgaaggaaaattggca
aaaccaagacaactgcacaactcacagtggggaatgatgtgccctgctgaaacacctgaa
ggacaggcttgtggtctagtgaaaaacttggctctcatggtttacataacagttggatca
gctgcttatcctatattggaatttttggaagaatggggtactgagaattttgaggaaata
tcaccatctgttatacccactgccacaaaaatctttgtgaatggaatgtgggttggagtt
catagagatcctgacatgttggtgaaaacattgagacgtttgagacgaagggttgatgtc
aacactgaagttggtgtagttagagacatacgtctgaaggagctccggatatacactgat
tatggccgttgtagccgtccgttgtttattgtggataatcaaaggctcttaataaagaag
agagatatctatgctctgcaacaaagggaaagtgcagaagaagatggttggcatcatctg
gttgcaaagggttttatagaatacatagacactgaggaagaggagacgaccatgatttcc
atgactatcagtgatctggttcaagctagactccgcccagaggaggcgtatacagaaaac
tacacacattgtgagattcacccatctctgatattgggggtctgtgcatcaatcatacca
tttcctgaccataatcagtcacctcgtaatacatatcaatctgctatggggaagcaagca
atgggaatttatgtcaccaactaccaatttcgcatggataccttggcgtatgttctctat
taccctcaaaagcctctggttaccacaagagctatggagcatcttcactttaggcaactt
ccggcaggaattaatgctattgttgccatttcttgctattctggatataatcaagaagat
tctgtcatcatgaatcaatcttctatagatcgtggtttctttcgatccttgttctttcgg
tcttacagagatgaggagaaaaaaatggggacgcttgtcaaagaagactttgggcgccca
gacagagcaagtacaatgggtatgcgacatggttcttatgataaactggatgatgatggt
cttgcaccacctggtactagagttacaggtgaagatgtaatcattgggaaaaccactcca
atatctcaagatgaggctgaaggacaatcatcacgatacactagacgtgatcatagtata
agcttgcgacatagtgaaactggaatggtggatcaggtgttattgactacaaatgcggat
ggtttgaggtttgtgaaagtgagggtcagatccgttcggattcctcaaattggagacaaa
tttagtagtagacacggtcagaagggaactgtaggcatgacatacacgcaggaggacatg
ccttggacggttgaaggcgtcactccagatattattgtgaatccgcatgctattccctct
cgaatgacaattggacagctaattgagtgcattatgggaaaagtggcagctcacatgggt
aaagaaggagatgcgactccttttacagatgtcacggtggataatataagcaaagctctt
cataagtgtgggtaccaaatgcgtggatttgagagaatgtacaatggccacacaggcaga
ccactcacagctatgatattccttggaccaacgtattaccaaagattgaagcatatggtt
gatgacaagattcactcacgtgggcgaggtcctgtgcaaatcttaacaagacaaccagct
gaagggcgatcccgtgatggtggtctccgttttggagaaatggaacgtgattgcatgatt
gcacatggtgctgctcactttttaaaagagaggctgtttgatcagagcgatgcgtatagg
gtacatgtttgtgaagtctgtgggctcatcgccattgctaatcttaagaagaattcattt
gaatgcagaggttgcaagaataaaacagatattgttcaggtttacattccatatgcatgc
aaattgctctttcaagagcttatgtcaatggcaattgcgccacggatgcttactaaacat
ctcaaatctgctaaaggcagacagtga
DBGET
integrated database retrieval system
