Capsella rubella (pink shepherd's-purse): 17880460
Help
Entry
17880460 CDS
T02984
Name
(RefSeq) probable pectate lyase 18
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb00040
Pentose and glucuronate interconversions
crb01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
17880460
Enzymes [BR:
crb01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
17880460
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
17880460
NCBI-ProteinID:
XP_006283843
UniProt:
R0F5J2
LinkDB
All DBs
Position
Unknown
AA seq
409 aa
AA seq
DB search
MEMQTKKLFIITIVSFLLYAPLFLSSPVPDPESVVEEVHKSINASVAGRRKLGYLSCTTG
NPIDDCWRCDPHWEQHRQRLADCAIGFGKNAIGGRDGRIYVVTDSGDDNPVSPKPGTLRH
AVIQDEPLWIIFQRDMTIRLKEELIMNSFKTIDGRGASVHISGGPCITIQYVTNIIIHGI
HIHDCKQGGNAMVRSSPRHFGWRTISDGDGVSIFGGSHVWVDHCSLSNCEDGLIDAIMGS
TAITLSNNHMTHHDKVMLLGHSDTYTRDKNMQITIAFNHFGEGLVQRMPRCRHGYFHVVN
NDYTHWEMYAIGGSANPTINSQGNRFLAPNIRFSKEVTKHEDAPESEWKRWNWRSSGDLL
LNGAFFTPSGGAASSSYAKASSLGAKPSSLVGPLTSGSGALNCRKGSRC
NT seq
1230 nt
NT seq
+upstream
nt +downstream
nt
atggaaatgcagacgaagaagctctttatcatcaccattgtctcctttcttctctatgcg
ccattgttcttatcttcaccagttccagaccctgaatctgttgttgaagaagttcacaag
agcattaatgcgtcggttgctggaagaaggaagttgggttatctctcatgtaccaccggt
aacccaatcgacgactgttggcgctgtgaccctcactgggagcaacaccgtcaacgtctc
gccgactgcgccattgggttcggcaaaaacgctatcggcggccgtgacggtcggatctac
gtggtcaccgactcaggagacgacaacccagtcagccccaaacccggaactttgagacac
gccgtgatccaagacgagccactctggatcatcttccagcgagacatgacgattcggctc
aaagaagagctcatcatgaactctttcaagaccatcgacggtcgtggcgcctccgtacac
atctctggcgggccttgtatcacgatccagtacgtgaccaacattatcatccatgggatc
catatccatgactgtaagcaaggtgggaacgctatggtgcggagctctccaaggcacttc
gggtggagaaccatatcggacggtgacggtgtctctatctttggagggagccatgtttgg
gtagaccactgctcgctctctaactgtgaagacgggctcattgatgctattatgggatcg
acggctataactttgtctaacaatcatatgacacatcatgataaagtcatgttgcttggt
cacagtgatacttacactcgtgacaagaatatgcaaatcaccattgcttttaaccatttt
ggtgaaggccttgtccaaagaatgcccaggtgtagacatgggtacttccatgtggtgaac
aatgactacacacattgggagatgtatgcgattggaggaagtgctaatcctacaatcaat
agtcaagggaacagattcttggccccaaacatcagattcagcaaagaagtgacaaagcac
gaggacgcgcctgagagcgagtggaagaggtggaactggagatcttccggagatttgttg
ctaaacggtgcgtttttcactccctcaggtggtgcagcctcgtctagctatgcaaaggcc
tcgagccttggggctaaaccgtcttcactcgttggaccattgacgtctgggtctggtgca
ctgaactgccgtaagggttcccgttgctga
DBGET
integrated database retrieval system
