Capsella rubella (pink shepherd's-purse): 17880577
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Entry
17880577 CDS
T02984
Name
(RefSeq) uncharacterized protein LOC17880577 isoform X1
KO
K15333
tRNA guanosine-2'-O-methyltransferase [EC:
2.1.1.34
]
Organism
crb
Capsella rubella (pink shepherd's-purse)
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
crb03016
]
17880577
03036 Chromosome and associated proteins [BR:
crb03036
]
17880577
Enzymes [BR:
crb01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.34 tRNA (guanosine18-2'-O)-methyltransferase
17880577
Transfer RNA biogenesis [BR:
crb03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
17880577
Chromosome and associated proteins [BR:
crb03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
17880577
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SpoU_methylase
TARBP1
DUF5917
Motif
Other DBs
NCBI-GeneID:
17880577
NCBI-ProteinID:
XP_023635654
LinkDB
All DBs
Position
Unknown
AA seq
1819 aa
AA seq
DB search
MDSSVITSLSLSFKQVPPAAVPAFLDCVLSSTGVSPLTLFESLINELPFRLEDTVNGDKR
FDSDECNHIASLVAGLCHLLKSFAGFGAADNPNTLQLFVWRVFIPLMKMVRAYDLDMLNT
IVQLFFDVVIETSVLDKLGVSLVPFLMRSVGVSMGMLQHEESDFIKWGELLLCDSLDTIS
MDENYIANLSGLFPIPLSCHLLNLILNAAFQSHQAAQEVESFAAGMLWDLCNTTERLLSQ
SVEHRSCAVSFLIPAIFKAFSSQCSLKMSRQGNMYILSRNGFKKRIWECCKKLFSVGSME
RRDAYSVLSLCLSTGSWADETESLVSQKDPVEFDFRSEHEFWDEIKKGLVVDESLVRKQS
LHILKSVLSISEVNNTSAEKKPEADSVHRSMTKKETWAEKEAKSLGVGELYGSVDSGLSS
QQEWQAFLLLYEMLEEYGTHLVEAAWGNQIDLLIKSSPRYDGSLKSDCNNSHHMEISDEE
TKILDWLEVLWNRGFRHDNPLVRCTVMESFLCIEWRRYKTCTQSMSQTFVLGPFIEGLND
PIHHKDFGLKGIYTSRTIEGAAQYVCAYTSCLSPRNRVGFFINLASLAKKQSFGRAGFMA
LVQCIVSTSYVVGGYGDKEMGHLEDKFSRTAHEPSCEHLSQDDVTHILDILKFVAESSRQ
HFNHKYRIRVYQKVLETAASVVNPCMVPLGTLLQFVSAIPREFTDHDGSLRKLMLEWLQG
CNRKTSNSLCTDGNRLLASLYEYLKGFISDHAENFDDDDLEAWDSQTKRWARVFFLIIDS
EEQLTDIIMFVQKSGLSIFQEKNHLARGPTKFLIFILSMLLELQNMQDGISELSSLMKRK
TCIGSVEKTGKQIVGDASVIKKKFAVVLLSLLKELIPFADSSCLIFWSHTTVENGTLPGS
VIGKLGGPSQRRLSGPSTTAVLEAVTLVKTIGWILSYCAQVTSGIELNLALAFFWKFTQH
TISSQICNSEAAAEVYLAAFEALVAVLSAFVSLCSAGAFNLLENDNTLLSMVDGEFWLQV
SVPAFLHNINHLLTAGLLVRSRRAVLLSWKWLCVESLLSVMHILDARRIPGDRKSFFSDD
TVKSIFQDIVESLENAGEGSALPMLKSVRLALGILASGKSSLDGFLGVDTQTMWQLVKSC
WILHISCKKRRVAPIAALLSSVLHSSLFSNKDMHIAEDGNGPLKWFVEKVLEEGQKSPRT
IRLAALHLTGLWLMYPRTIKYYIKELRLLTLYGSVAFDEDFEAELSDNNDARTEVSLLAK
SPDPELTELFINTELYARVSVAGLFQKLANLANMVEPASQNQDCQDALVAGKLFLLELLD
AAVHDKDLSKELYKKYSAIHRRKIRAWQMICIMSRFVSNDIVHQVMDSVHICLHRNNLPA
VRQYLETFAINIYLNFPALVKEQLVPILKNYDTKAQQALSSYVFVAANIILHAEKTAQQT
HLRELLPPIIPLLTSHHHSLRGFAQLLVHRVLFRLFPPVESASSQTIPLEKLSFENLKSY
LDKNPDCSRLRASMEGFLDAYDPSTSATPAGVFVNRVEDTEFECVPTCLMDNVLSFLNDV
REDLRASMAKDVVTIKNEGFKMNELPDCRLTVSTKDEQKLSEPSSLDFQKKITLSKHEKQ
DASSTSVLRNGETYKRLFEMEKEDELVSQLLRSRSMEVERLKSDRQSLILVASLVDRIPN
LAGLARTCEVFKASGLVVADANIIHDKQFQLISVTAEKWVPIMEVPVNSLKLFLEKKKRD
GFSILGLEQTANSISLDKHQFPKKTVLVLGREKEGIPVDIIHILDACIEIPQLGVVRSLN
VHVSGAIALWEYTRQQRIQ
NT seq
5460 nt
NT seq
+upstream
nt +downstream
nt
atggattcatcggtgattacctcgctgtccttgagcttcaaacaagttccaccagcagct
gttcctgcgtttcttgactgtgttttaagctccacaggcgtttctcccttgacccttttc
gaatcacttatcaatgagttgccttttcgtttagaggatacggtaaatggagataagagg
tttgattctgatgaatgcaaccacattgcttcattggtggctggactttgtcatctactt
aagagttttgcaggctttggtgctgcggataatcctaatacgttgcagttgtttgtgtgg
agagtgtttattccactcatgaagatggttcgtgcatatgatttggatatgcttaatacg
attgtacaattgttctttgatgtagtgattgagactagtgtattggataaactgggagtg
agcttggtgccttttttaatgagatcagttggtgtttcgatgggaatgcttcaacacgaa
gaatcagatttcatcaagtggggggagctgttgctttgtgattctttggatacaataagt
atggatgaaaactacattgcgaatttgtctggattgtttccgattccactgtcttgccat
cttctgaatttgatactgaatgctgcttttcaaagtcaccaagcagctcaagaggtggaa
agttttgcagctggtatgctttgggatttatgtaatacaactgagcgtcttttgtcacaa
agtgtagaacatcgttcatgtgctgttagtttcctcatccctgctattttcaaggcgttc
tcttctcagtgctctttgaagatgtcacgccaaggaaatatgtatatactttcaaggaat
ggcttcaaaaaaagaatttgggaatgctgcaagaagctgttctcggttggatcaatggag
agaagggatgcttacagtgtcctttctttgtgtctttctactggctcttgggcagatgaa
actgaaagtttggtttcacaaaaagaccctgtcgaatttgacttcagatccgaacacgag
ttttgggatgaaatcaagaaaggcttggttgttgatgagagcttagtaaggaagcagtca
ttgcatatcctaaaatcagttttatccataagtgaagtgaataataccagtgctgagaag
aagcccgaagcggattcagttcatcggtctatgacaaaaaaggagacgtgggcagaaaag
gaagccaagtcacttggtgtgggagaattgtatgggtctgttgactctgggttgtctagt
cagcaggagtggcaagcttttctgctcctgtatgagatgcttgaagagtacggcactcat
cttgtagaagcagcatggggtaaccagattgatttattaatcaagtcatctcccagatat
gatggatccttgaaatccgactgtaataactctcatcacatggaaatttcagatgaagaa
accaaaattttggactggttagaggttctttggaatcggggatttcgtcatgataaccct
ctagtcaggtgcacagtcatggagtcttttctatgtatcgagtggagaagatacaaaaca
tgtacacaatcaatgtcccaaacttttgtgcttgggcctttcatagagggtttgaatgat
cctatacaccacaaggattttgggctgaaaggaatttatacctcaagaacaattgaaggt
gcagctcaatatgtgtgtgcgtacacaagttgcctcagcccaaggaatcgagttggattt
tttatcaacctggcatctcttgcgaaaaaacagtcttttggtagagctggatttatggct
ctcgtacaatgcattgtttctacttcatatgtagttggaggatatggggacaaggaaatg
gggcatctcgaagataaattctctaggactgcccatgaaccttcttgtgaacatttaagt
caagatgatgtgacacatatactggatatcttgaagtttgttgcagaaagcagcagacag
cattttaatcataaataccgtatccgagtttatcagaaagtgttagagactgcggcttct
gtggtgaacccttgtatggttcctcttggaacattattgcagtttgtttcagcaattcct
cgggagtttactgaccatgatggttcattgcgaaaactgatgctagaatggcttcagggg
tgcaacagaaagacttccaacagtttatgtactgatggaaatcgtcttctggcaagcctt
tatgagtatctgaaaggatttattagtgatcacgctgagaattttgatgatgatgacttg
gaggcatgggattcccaaacaaaacgatgggcaagagtatttttcctcataattgatagt
gaagaacagctcaccgatatcataatgtttgtgcaaaagagcggtcttagtattttccaa
gagaagaatcatttagcacgggggcctacgaagttcttaatcttcattctgagtatgctt
ttagagctccaaaacatgcaagatggaatttctgagcttagttctttgatgaaacgcaag
acatgcattggctctgttgagaaaactggcaagcagattgttggcgatgcttcagttatt
aagaaaaagtttgctgttgttctcttgtcattactgaaggagttgattccatttgctgat
tcatcttgtttgatattctggtctcacactactgtggagaatggtactctgcctggttct
gttatcggaaaactagggggtccaagtcaacgccggctatctggtccttctacaacagct
gtactagaagctgtaacgttggtgaaaactattgggtggatcttgtcatactgtgcccag
gtcactagtggtattgaactcaacctagcattggctttcttttggaagttcacgcagcat
accatatcatctcaaatttgtaattctgaggccgcagctgaggtctaccttgcagcattt
gaggcgctagttgccgtactgagtgcatttgtgtccttgtgctctgctggagctttcaac
ctattagaaaatgataatacattgttatccatggtagatggtgaattttggttacaagtt
tcggttccggctttcctccataacattaatcatcttctcacagcaggacttctggtaaga
agtagaagggcagttctgctaagctggaagtggctttgtgtggagtctctgttatcagtc
atgcacattcttgatgccagacgtattccaggggatagaaagtcgttcttctcagatgat
actgttaaaagcatttttcaggacattgtagagagccttgaaaatgctggggagggttcc
gctttgcctatgctgaaatctgtcagactcgctttggggatacttgcgtctggaaaatca
tccttggatggtttcctgggcgtggatactcagacgatgtggcagttggtcaaatcatgt
tggatattgcatatcagctgcaaaaaaagaagggttgcacctattgctgcacttttgtct
tctgtgttgcattcttctttgtttagtaataaagatatgcacatagctgaagatggaaat
ggtccgctgaagtggtttgttgaaaaagttctcgaggaaggtcaaaaaagtccccgcaca
attcgccttgcggccttgcacctaacaggactctggctcatgtacccaaggacgataaag
tactatataaaagaattgaggctcctgacactctatggttctgttgcttttgatgaagat
tttgaagcggaattatctgacaataatgatgcaagaactgaagtatcattattggccaaa
agtccagaccctgaactgacagaacttttcatcaacacggagttgtatgcacgtgtctct
gttgctggtctgtttcagaagctggctaatttggccaatatggttgaaccagccagtcaa
aaccaagattgtcaggatgctcttgtggctggaaaattgtttctgttggagcttcttgat
gcagcggtgcatgataaagacttgtcgaaggagctttacaagaagtatagtgctatccat
agacggaaaatacgtgcttggcagatgatatgcattatgtcgcgatttgtcagcaatgac
attgttcaccaagttatggacagtgtgcacatatgcttacatagaaataacctgcctgct
gttcgacaatacctggaaacatttgccatcaacatttacctgaactttccagcattggtt
aaagagcagttagttcctatactaaaaaattatgacactaaagctcagcaagctctctcg
tcctatgtcttcgtagcagccaatatcatcctacatgccgaaaagacagctcaacagaca
catctgagagaacttcttccaccaataataccgttattaacttctcatcatcatagctta
cgtggttttgctcagttattagtgcatcgagtactctttagactatttccccctgtggag
tcagcatcctctcaaacaatacccctggagaaactttcttttgagaatttgaagtcttac
ctggacaagaatcctgattgttcgagattgcgagcatcaatggaaggatttcttgatgcc
tatgatcccagcacatctgctactccggctggtgttttcgtcaatcgtgttgaggacact
gagtttgaatgtgttccaacatgcctcatggataacgtgctctcatttctgaatgacgta
agagaagatcttcgtgcttccatggcaaaggatgtagttaccattaagaatgaaggcttc
aagatgaatgaattgcccgactgtcggttgaccgtgtccactaaagatgaacaaaagctt
tctgagccatcttcgttggacttccaaaagaagatcactctgtccaaacatgagaagcaa
gatgctagctcaacttctgtgctccgaaacggggaaacttacaaacggctctttgaaatg
gaaaaagaagatgagcttgttagtcagctcttacgatctagaagcatggaagtcgaaagg
ttgaaatctgaccgacagagtttgatccttgtggcttcattggttgatcgtattcctaat
cttgctggattagcgcggacatgtgaggtgtttaaagcatcaggtcttgttgttgcagat
gcaaacataatacatgacaaacaattccagctaatcagtgtaactgctgagaaatgggtt
ccaatcatggaagtcccagtgaacagtttgaaactgttcttggagaagaagaaacgggat
ggcttctcaatcttgggattggaacagacagcgaatagcatttcacttgacaaacaccaa
tttccaaagaagacggttttggtgctgggtcgtgaaaaggaaggcatccctgtggatata
attcatatactggacgcttgtatcgagatcccacaacttggagttgttaggtccctcaat
gttcatgtcagcggcgccattgccctctgggaatacactcggcagcaacgcattcaatag
DBGET
integrated database retrieval system
