Capsella rubella (pink shepherd's-purse): 17880766
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Entry
17880766 CDS
T02984
Name
(RefSeq) U3 small nucleolar RNA-associated protein 20 isoform X1
KO
K14772
U3 small nucleolar RNA-associated protein 20
Organism
crb
Capsella rubella (pink shepherd's-purse)
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
crb03009
]
17880766
Ribosome biogenesis [BR:
crb03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
17880766
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UTP20_N
UTP20
UTP20_C
BrxB
Motif
Other DBs
NCBI-GeneID:
17880766
NCBI-ProteinID:
XP_023633715
LinkDB
All DBs
Position
Unknown
AA seq
2650 aa
AA seq
DB search
MATSADARAVKSLNNSEGRKKFVFKNFSDRINDIDINVYRSLDKVKAEPSEGSTFFRDCL
VEWRELNTAEDFILFYEEMLPLVQNLQLVILQKELIFSKLVSRLQMKARLSLEPILRLIA
ALSRDLLKDFLPFLPQIVNSLVTLLKNGAHKEPEIIEQIFSSWSSVIESLRKYLISDIEG
ILRDTLQLRYHPKEYISEFMSESMSFLLRNATDEQLEKGINMILSEVSHQPNKAGGVGLL
YYIMRRTCGRLHSKAGRVLEFLLKDSTLSSCDDFPQGPDTVVEVVSLVFQRICEDLEAEK
SIVLWEHLYENINKSISNKNSVHLSRLLIVLTAVVRIEKGRKVHDSSSLIGIVSRIVSTF
VTSSETVVEGDNISAVLDEVLQLISCTINRVNEMEIVASQWAPIFALKSSSLLTFLREFL
QKDQSVVKAFTNNILSAINNMIWESPEEVIPLLLKLCESQQTSRDGVNIITQTFESKYER
IHSFLEESLKKIQQNIKNTGLVQIDEAKLAIIWGVVNCYPYFRVESSLLICFKKTLRQHL
RVSDADTFRAPELMWQSILGTALRSCYKLPGRINHSDLEEALSLAKDYKSCVQVLSPVAD
FLDFIHRPALAHDDRSKAYLELQANEAGEAFDIFSENLRHPNKDIRLMTLRILCHFETVS
SDPSFEEHPPKKKMKSAETIKAVHKENVLQLLLSVEETAPTVDTSRMLVSLISTIQKDLS
AGRIHEAYVKLVLNGMLGVLHNRYFDLWCPASECLAVLVRNHTSAVWSDFVCYLEQCQLK
FETLHDHSENANQSMSERHSDLIGRFNSFLYPPSECTPIATVISQLLQTLQKASSVAQSH
ASEILPLLLKFLGYNSENPVSVGSYNGRVCKGEDWKTLLIQWLTLLKLMKNPRSFCFNQF
LNDVLQNRFLDDNDAEIQTNVLECLLLSNDFLLPHRQHLLNLIKPKELREELTTWNLSED
IVEPHRSQIFSLVVRILMPKVRTLKSSASRKHTSIRHRKAVLCFLSQLDVNELALFFALL
IKPLNIISEETMDSFWSSGKSSMDYFHNSNFLKYFTVDTISKLSRNQKSGFLHVIQHILE
VFDEFRVRPFLDFLMGCVVRLLVNYAPNNDAERNIDSLAANPSTSDDKENASINHDQAVA
ALKQFKELRSLCLKIIAHVLDKYEDCDLGSEFWDLFFMAVSPLIKSFKQEGSSSEKPSSL
FSCFLSMSRSRNLLTLLCREESLVPDIFSVLTVTTASEAIKSSALKFIENLLCLENEFGE
DDNMISGFLDPYIDALINSLHSLFIGDILKRKSVKYHGEREIKILKLLSKRMRDRSNVMM
KYLDVLLSFLDRSVKDSDIRHEALLAIQDIIPSLGIESTNKIINIISPLLVDAERDVRLC
ICNLLESIAKIDVSMDDVAKRIRDMNAISAMEVDDLDYEKIVNAYVEINADFFNKSSEQQ
TMIILSQSIYNVSSESIMLRGSAQKLLSSFIDFSASILCEEASAHSEFGKEVKISDVSWT
RDRILCILRNFILKHIGDAINSGGIIIKEWILLIREMVTKLPDAGNLSAFRPLCSEDENV
DFFKSIVHIQAHRRARAISRFTNVVKDSSLPEGIVRKLFVSVFFNMLLDGQDGKDNNVRN
ACTEALASVSAHMSWKSYYALFNRCFREMNKHPRKGKLLLRLICLILDKFHFSEDSYPQE
ADEIKTCLQKIVFPKMQKLMNSDSDNVNVTSSVAALKVLKLLPEDVMDSNLSSIIHKVAS
FLKNRLESIRNEARLALSACLKELGLEYLQVVVNVLRAILKRGSEVHVLGYTLNFILSKC
LSKSTCGKLDHCLVDLLAVVETDILGEVAEQKDVAKFESKMKETRKRKSFETLKLIAENV
TFRSHGLTLLSPVTAQLQRHLSPKIKTNLEKMLKQIAAGIEGNPSVDQGDLFVFIYARVD
DGINNRNGLEDQVSFPPSKKKKKSRDSKETAGLISGAKSCPHLITVFALDLLHHRMKKLK
CDNTDRELLSKLDPFVRLLTGCLSSKYEDIVSLSLRCFTSLIRFALPSLMSEADEVKTAL
LTIAQSAVSSSSPLVQSCLKLLKTLLGNKYITLSSEQLTMLVQFPMFVDLESDPSFVALS
LLKAIVKRKLVVPEIYDIATQVSELMVKSQLKSIRKKCQQILLQFMVHYTLSEKRLEQHV
NFLLENLRYEHSTGRDAVLDMLHALILKFSEPNLGKQSVLDQQSKTLFLQLVLCLANDVD
KEVRFRAGAVIEILIGRMSTDQVESSLLYCLCWYKQQNLRASAAQVLGFFIDTMKKTFRK
HIYNTVQDAKTILESAVNASSLQLQDTVEEGSLPYWKEAYYSLVMIEKMLEQFPDLCFGK
DLEDIWKMIIKFLLHPHAWLRDISCRLLNRYFVALAGKRRAKSQTLVAGSLLEKPSRLFM
VAVSLCFQLKEQSTRANVDVDLLTANIVFAASSLHSLVGKSDQATHSGFWSSLDEDEQVA
FLKAFEVLDSGKGRSTFLALTSGKHTENGEDDVNDVRNVLIGSLLKRMGKLALDLESVQM
RVVFNVYKAFTSQMNQEECRLYAYKILLPLYKVCEGFTGKIITDELKQLAEDVRDSIRDK
SLGNNLFVEVYSEIRNSLRTKREKRKREEKLMAVVNPERNAKRKLRLASKNKANKKRRMT
SMKLSRWACS
NT seq
7953 nt
NT seq
+upstream
nt +downstream
nt
atggcgacttcagctgatgctcgagcggtcaagtcgctcaacaattccgaggggcggaag
aaatttgtgttcaagaatttctctgatagaatcaatgacattgacatcaacgtgtatcgg
agcttggataaggtgaaggctgagccttctgaaggatccacatttttcagggattgcctc
gtcgaatggagggaactgaataccgcagaagacttcattttattttatgaagaaatgtta
ccattagttcagaatttgcagttggttattttgcaaaaagaattaatcttctcgaaactt
gtctctcgattacaaatgaaagcaagattgtctctggaacccattctcaggttgattgct
gctctatcaagagatctcttgaaggactttcttcccttcttgccacagattgtgaactcg
ttagtgactctcctaaaaaatggggcccataaagagccggagattattgagcagatattc
tcatcatggtcttccgtaatagagtccttgcggaagtatctcatatccgacatcgaaggc
attctcagggatacgttgcaattgaggtatcaccctaaagagtatatcagtgaatttatg
tcagagtccatgtcatttttgttgaggaatgcaacagatgagcaacttgaaaaagggatc
aatatgatcctttctgaagtttcacatcaacccaacaaagctggaggagttggattacta
tattatattatgcggcgtacctgtggaagacttcattcaaaagctgggagagttttagag
ttcttgctgaaagattcaacattatcttcttgtgatgattttcctcaaggccctgataca
gtcgtggaagttgtgagtttggtttttcagagaatatgcgaggatttggaagcagaaaaa
tcaattgttctgtgggaacacttgtatgagaatataaacaaatcaatctcaaacaaaaat
tcggttcatctaagccgactgttgattgtgcttactgcagttgttaggattgagaaaggt
cgcaaagtacatgatagctcatcactgattggaatcgtgagccgcattgtgtcaactttt
gttacttcctctgagactgttgtagaaggggataatatatctgctgttcttgatgaagtt
ctgcaattgatatcatgcacaatcaacagagtcaatgaaatggaaattgttgcttcgcaa
tgggctccaatttttgccttgaagagctcaagtttgctgacttttttgcgggagttccta
cagaaggatcaatcagttgttaaagcctttacaaataatatattaagtgcaattaacaac
atgatttgggagtctccggaggaagttattcctctgttactaaaattgtgtgagagtcaa
caaacaagtcgtgacggggtgaacatcataactcaaacatttgagagtaaatatgagaga
atacattcgttcttggaagagagtttaaaaaagattcaacagaatatcaagaatactgga
ttagtccaaattgatgaggccaagttggctatcatttggggagttgtcaactgttatcct
tattttagagtggaatcatcattactgatttgctttaagaagactctcagacagcatttg
agagtgtcggatgcagacacttttagggccccagaattgatgtggcagagcatacttggt
actgctttgaggtcatgttacaaactgccgggacgaatcaaccacagtgatctagaggaa
gctttgtctttggctaaagattacaagtcatgtgtacaagtgttgtctcccgtggccgat
tttttggattttatccacaggccagcgttagctcatgatgacaggtctaaggcatatcta
gaacttcaagcaaatgaggctggagaagcttttgacatattttctgaaaatttgcgtcac
ccaaacaaagacatccgacttatgactctgaggattttgtgccattttgaaactgtgtcg
tctgacccttcttttgaagagcatcctcctaagaagaaaatgaaatctgcagagaccata
aaagctgttcataaagagaatgttcttcagttactactctcagttgaagaaactgctccc
acggtggatactagtcggatgttggtcagtttgatctctacaatacaaaaagatctctcc
gctggcaggatacatgaggcatatgtgaagcttgtattgaatgggatgttgggagtatta
cataatagatattttgatttgtggtgtccagcatctgagtgtcttgctgttcttgtgagg
aatcacacaagtgctgtgtggagtgattttgtttgttatttggagcagtgccaactaaaa
tttgaaacactccacgatcatagtgagaatgcgaaccaaagcatgtcagagaggcattcg
gatctgattggccgttttaattcgtttctctatccaccatctgagtgcacacctattgca
acggtgatatctcagttgctacagaccttacaaaaggcttccagtgttgctcagtctcac
gcttctgaaattctccctttgttgttgaaatttctgggatacaacagcgaaaatcctgtg
agtgtcggatcatataatggccgagtttgtaaaggagaagactggaagacgcttcttata
caatggttgactttgctgaaattaatgaagaatcctaggtcgttttgttttaatcaattt
ctaaacgatgttcttcagaataggttcctggatgataatgatgctgaaatacaaactaat
gttctagagtgccttctgttgtcaaatgatttcttactcccacaccgccagcatttgttg
aatttgatcaaaccaaaagaattgagagaagaactcacaacctggaacttgtctgaagac
atagtagaacctcacagatctcaaatattttctcttgtagttcgcatccttatgccaaaa
gttaggactttaaaaagttcggcttcacggaagcatacaagtatccgtcaccggaaggca
gttctttgctttttatctcagctcgatgttaatgaacttgccctgttctttgcattgttg
ataaagcctttgaacatcatatcagaggaaacgatggactcgttttggagttctggcaaa
agttctatggactacttccataactcgaatttcctgaaatatttcactgttgatactatt
tcaaaattatccaggaatcagaaatctgggtttctgcatgtcatccaacatattcttgaa
gtctttgatgaattccgtgtccgaccttttctagactttttgatgggatgtgttgtccgg
ctattggtaaattatgctccaaataatgatgcagaaaggaacattgattcattggcagcc
aacccatcaacttcagatgataaagaaaatgcttcaataaatcatgaccaggctgttgct
gctttgaagcagtttaaagagttgcggtccttatgtctgaaaatcattgctcatgttctt
gataaatacgaggattgtgatcttggctccgagttctgggatctcttctttatggcagtg
agtcctttaattaagagtttcaaacaggagggttctagtagtgagaaaccaagttctttg
ttctcatgcttcttgtcaatgagtagaagccgtaatctcttgaccctattatgtcgagaa
gagtctcttgttccagacattttttcagttctaacagtcaccacggcttcagaagctata
aagtcttctgccttgaaattcatagagaatctgctttgccttgaaaatgagtttggggag
gatgacaatatgatcagtggattcttagatccttatatagacgcactgatcaacagcttg
cattctcttttcattggggatatattgaaaaggaaatcagtcaagtatcatggggaaagg
gagattaaaattcttaaattattgtcaaagcgtatgcgagatcgctctaatgttatgatg
aagtatttggacgtcttgctgtctttcttggatagaagtgtaaaagattctgatattcgt
catgaggctttgctagctattcaggatatcataccgtctcttgggattgagagtaccaat
aaaattataaacataatctctcctctactagtcgacgctgaacgtgacgttagattatgc
atttgtaatctccttgaatctattgcaaaaattgacgtgtctatggatgatgtggcaaag
cgaatccgcgatatgaatgccatctcagccatggaagttgatgacctggactatgaaaag
atagttaatgcttatgtggagattaatgcagatttttttaataaatcctcagagcagcag
acgatgatcatactctcacagagtatatacaacgtatcatcagaatccattatgttaagg
ggtagcgcacagaagctcttgtcttctttcattgacttttcagcctcaatactttgcgaa
gaggcttcagcacactctgaatttggtaaagaggtcaaaatatctgatgtaagctggaca
agggatcgaatactgtgcattttaagaaatttcattttgaaacacatcggagatgcaatc
aacagtggaggcatcataataaaggagtggattcttttgatacgcgaaatggtgaccaaa
cttccagatgccggaaatctttctgcattcagacctttatgctcggaagatgagaatgta
gatttttttaaatctattgttcacattcaggcacaccgtagagcaagggcaatttcacgt
tttacaaatgtggtcaaagatagcagtctgcctgagggaatagtgagaaaactttttgtc
tcggtctttttcaatatgttgctcgatgggcaagacggaaaagataataatgtccgaaat
gcatgcacagaagcccttgcatctgtatctgcacatatgagttggaagtcgtactatgct
ctattcaatcggtgttttcgcgagatgaacaagcatcccagaaagggaaaactcctgctg
cgacttatctgcttgattttggataaatttcatttttcagaagatagttacccgcaggag
gcggatgaaattaagacttgccttcagaaaattgtgttcccgaagatgcagaagctgatg
aattctgattccgataacgtaaatgttaccagcagtgtggctgcactgaaggttctaaaa
ctactccctgaagatgtaatggactcaaacctgtcctcgataattcataaagttgccagt
tttttgaagaatcgattggagagcatacgtaatgaagccagattggctctgtcggcttgt
ttgaaagaacttgggctggagtatttgcaagttgtagtcaacgttttacgtgctatctta
aaacgaggatctgaggtgcatgtgctggggtacacactcaatttcatcttatcaaagtgc
ctgtccaaatctacatgtgggaagttagatcattgtttggttgatctccttgctgtggta
gaaaccgatatccttggagaggtggctgaacagaaagacgttgcaaaattcgaatccaaa
atgaaagaaacaagaaaacggaagtcattcgagactctgaaactgattgctgaaaatgta
acgttcagaagccatggattgactttactctctccggtcactgctcagctgcagcggcat
ctatctccgaaaatcaaaactaatctggagaagatgttaaaacaaattgcagctggtatt
gaaggcaatccatctgttgaccaaggagatctttttgtttttatatatgcccgtgttgat
gatggtattaacaacaggaatggtcttgaagatcaagtgtcttttcctccatccaaaaag
aaaaagaaatcaagagattcgaaagagactgctgggttaatttctggtgctaagtcatgt
ccacatcttataactgtgtttgctcttgacctgttgcatcaccgaatgaaaaaattgaaa
tgcgacaacactgatagagagctattgtccaagttagatccatttgtcagactacttact
ggatgcttgagttctaagtatgaggatattgtatctttatctcttagatgttttacttca
ctaataaggtttgcgcttccttccctcatgtctgaagcagatgaagtaaaaacagcattg
ttaaccattgctcagtctgcagtgagttccagcagtccacttgtgcagtcatgtcttaag
ctgttaaaaacgcttctcggcaacaagtatataactttatcatctgagcagttgacaatg
ttggttcagttccccatgtttgttgatctggagtctgacccatcctttgttgctctttca
ctcctcaaggcaatcgtgaaacggaagcttgtagttccagagatatatgacattgctact
caggtttcagaattgatggtaaaaagtcagttgaaatcaatccgcaagaaatgtcaacag
atattgttgcaatttatggtccactatacactctctgaaaaacgtttagagcaacatgtg
aactttctactggaaaatctgaggtatgagcattcaactggaagagacgcagttcttgat
atgcttcatgcgctaatcttgaaattctcagaacctaatctcggcaagcagtcggttctt
gaccagcagtcgaaaacattgttccttcaacttgttctttgtttggcaaatgatgttgat
aaagaagtgcggttccgggctggtgctgtgatagaaattctgataggccgcatgagtaca
gatcaagttgaatccagtctcttgtactgtttgtgttggtataagcagcagaacttacgg
gcttctgcagcacaggtgttgggattttttattgacacgatgaagaaaacatttcggaag
catatctacaatacagtgcaggatgctaaaacgattttggagtctgctgttaatgcttct
agcttacagctgcaagacactgtggaggaaggcagtcttccttattggaaggaagcatac
tactcactggttatgattgagaagatgctcgagcaatttcctgatttatgtttcggaaaa
gatttagaggatatttggaaaatgataattaagttcttgttgcatccacacgcatggttg
cgagatatatcctgccggcttctaaatcgttattttgtggcattagctgggaagagaaga
gcaaaatctcagacattagtagccggttctcttttagagaagccaagtaggctgttcatg
gtggctgtttctctttgcttccagttaaaggagcaatccaccagggccaacgttgatgtt
gatctcctcacagcaaatattgtttttgcggcctctagtcttcattctcttgttggaaaa
tctgatcaagcaactcacagtgggttctggtccagtcttgacgaggatgagcaagtggcg
ttcctcaaagcctttgaagtgcttgattcagggaaaggaaggtctacttttttggctctt
acttcaggcaaacatactgagaatggtgaagatgatgtgaatgatgtaagaaatgtattg
attggaagtttgctcaaaagaatggggaagcttgctcttgatttggagtctgttcagatg
agagttgtgttcaacgtctataaagcttttacctcacaaatgaatcaagaagaatgtcgc
ttatatgcctataaaattctgcttccgttgtacaaagtctgcgaaggatttaccggaaaa
atcatcacagatgagttgaaacagctagcagaagatgtacgagacagtataagggacaag
agtttaggcaacaatttgtttgtggaagtttacagtgaaataagaaacagtttgagaacg
aaacgagagaagagaaagcgagaagagaagctaatggcagtggtaaatccagagagaaac
gccaagaggaaactgagattagcttcaaagaataaagcaaacaagaaaaggagaatgacg
agcatgaaattgtctagatgggcttgctcttga
DBGET
integrated database retrieval system
