Capsella rubella (pink shepherd's-purse): 17880827
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Entry
17880827 CDS
T02984
Name
(RefSeq) CCR4-NOT transcription complex subunit 10
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
17880827
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crb03019
]
17880827
Messenger RNA biogenesis [BR:
crb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
17880827
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_12
TPR_10
TPR_8
TPR_19
HEAT_Nup120
TPR_7
SRP_TPR_like
Coatomer_E
Motif
Other DBs
NCBI-GeneID:
17880827
NCBI-ProteinID:
XP_006282564
UniProt:
R0F1H8
LinkDB
All DBs
Position
Unknown
AA seq
787 aa
AA seq
DB search
MDSRDSLSAVSSDAARDASSLSEDAVLSVTSTLAKSALSCFQSGDFEECIDILIQLDQKK
HNDPKVLHNMAIAEYFKGGCSKSKKLLEELNCVKKQSEELASAAREQVEAVNPGTNASVS
KYQYDTTLTILNIAVTWFHMHQYAKSSSILEPLFQNIEPLDETIALQICFLLLDIALACR
DAVKFLAVFDYMDKAFCVGFGSHEENGTMQLSSNQVSKTSSLLSSSVVSDTLKSDLTAAE
SSLCEETLDYDNMLAEMEAEKRMKPVGHIPANNILKTLSERSFSTADLKLELQLYKVRFL
LLTRNLKLAKREVKHAMNIAQKRDSSMALLLKSQLEYAHGNHQKAMKLLVVSGIQKEAGT
SGIFDNNLGCIYYQLGKYEASSRLFAKALRSCSSLRNKKPVKMFSLSQDKSLLITYNMGL
LYLARGEPLLAAQCFQKASVVFCRQPLIWLRLAECCIMALQKGLLEERNTSLDRSEIRAN
VVGKGKWRKLLIEENGHVEHAGSTQCRKLSLPLARACLSNGIYLLNESLLSDSKSDLQST
LSVGTNETQEASSADHGDANTNSDLKETKGGMNQDIIQNSLSAFKDVQSREKQLLKQALL
ANTAYVELELEDPIKALSAANSLLQLPDCSKIYVFLGHIYAAEALCLLNRPVEAGAHLSA
YLVGQDDFKLPYAQEDFDQWRMHTSSECEETSDSPTGNTRDSVFLKPEEARGALFADLAA
LLATQGHHEQAKHMITNALTLLPNNVQATVTAIYIDLMLGRSQDAITRLKQCTRVSFVPG
RLEVRAS
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
atggattctcgagattcgttgtcagctgtatcatccgacgccgcgagagatgcgtcgtca
ctctccgaagacgccgttctctctgttacctctacactcgctaagtccgctttatcttgc
ttccaatctggggatttcgaagaatgtatcgacattttgattcagctcgatcagaagaag
cataacgatcctaaggttctacacaatatggcaattgcagagtacttcaagggtggttgc
tcgaaatccaagaaattgctggaagagcttaactgtgtcaagaaacagagtgaagaactt
gcttctgcagcaagagaacaagtggaagctgtaaaccctggaactaacgcatctgtgtca
aagtatcaatatgatactacattaacaattctcaacattgcagttacctggtttcatatg
catcagtatgcaaaatcttcatccattctagaacctttgtttcaaaatattgagccgcta
gatgagacaatcgcacttcaaatctgtttcttgttgctggatattgcactggcttgccgt
gatgctgttaaatttctggctgtgtttgactatatggacaaagctttttgtgttggtttt
ggaagtcatgaagaaaatggtacaatgcaactttcttccaatcaggtatcaaagacatct
tctctcctgagcagctcggtggtttcagatactttgaagtccgacttaacagccgccgaa
agtagtttgtgcgaggaaactcttgattatgacaatatgctagcagaaatggaggcagag
aaacgaatgaagcctgtcggccacattccagcaaacaatattctcaagacattaagcgaa
aggtcattctcgactgctgatctgaaactcgagttgcaactttacaaggtccgatttttg
cttcttaccagaaacttgaaactggcgaagcgtgaagttaaacatgcaatgaacattgct
cagaaaagggactcttctatggctctcctcttgaaatcccagcttgagtatgctcatggg
aatcatcaaaaggctatgaagcttctggtggtctctggtattcaaaaagaagcagggact
tcaggaatcttcgacaacaaccttggttgcatatactatcagcttggaaagtatgaagct
tcctctcggttatttgcaaaagctctaaggagctgttcatcacttcgaaacaagaaacca
gtgaagatgttttctctctcacaggataagtctttgttaatcacctacaacatgggtttg
ctttatttggcgcgtggggagcctctacttgctgctcaatgtttccagaaggcaagtgta
gttttctgcagacaacccctcatttggctccgtttagctgaatgctgtataatggcttta
caaaagggccttttggaagagagaaacacttctttggatagatcagaaatcagagccaat
gtagttgggaaagggaagtggagaaaacttttgattgaagaaaatggacatgtggaacat
gctggtagtactcagtgccgaaagctttcgttaccactggcacgggcctgtctctcaaat
ggtatatatctgctcaatgagtctctcttgagtgattctaaatcagatcttcaatcgaca
ttatccgtggggacgaatgagacccaagaagcatcatccgctgatcatggggatgctaac
acgaactcagacttgaaagagacaaaaggaggaatgaaccaggacataatccaaaactcc
ctctctgctttcaaggatgttcaaagtagagaaaagcaattgcttaaacaggcactgctt
gccaatacggcatatgttgaactggagttggaggatcctatcaaagccttgtcggctgct
aattcactcttgcaacttcctgattgttcaaagatttatgttttcttaggccatatttat
gcagcagaggccctctgcttgctcaaccgtcctgttgaagctggcgcacatttatctgcc
tatctagttggacaggatgattttaaattgccatatgctcaagaagactttgaccagtgg
cgtatgcacacaagctctgaatgtgaagagacatcggactcgccaactggaaacacccgg
gattctgttttcctaaagcccgaagaagctcgtggagcactttttgcagaccttgcagcg
ctacttgccacacaaggacatcatgaacaggccaaacacatgataacaaacgcattaact
ctcttaccaaacaacgtacaagcgacagttacagcaatctacatcgacctcatgttgggt
aggtcacaagacgccattactcggttaaaacagtgtacccgtgtgagctttgttccaggc
agattggaagtgagagcctcgtag
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