Capsella rubella (pink shepherd's-purse): 17881129
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Entry
17881129 CDS
T02984
Name
(RefSeq) probable pectate lyase 4
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb00040
Pentose and glucuronate interconversions
crb01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
17881129
Enzymes [BR:
crb01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
17881129
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SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
17881129
NCBI-ProteinID:
XP_006289438
UniProt:
R0FJQ2
LinkDB
All DBs
Position
Unknown
AA seq
297 aa
AA seq
DB search
MTGNIGKGVTQYKVTDPSDDPLKPKPGTLRYAATLVKGKKWITFKRNMKIKLHKPLLISS
FTTLDGRGVSVHISGPACLIVYKATDVIIHGLKIHDCKAHPPSSVMGPDSKIIQLGQVDG
DAIRLVTAKKVWIDHNTLYDCEDGLLDVTRGSTDVTVSNNWFRNQDKVMLLGHDDGYVRD
QDMRVTVVFNHFGPNCNQRMPRVRHGYAHVANNYYQGWTQYAIGGSMSPRVKSESNYFVA
PKSGNKEVLEKHALITAQIKGSQSQKLKPLKNSQVQLEPCTAPETPSVRATTLNMTF
NT seq
894 nt
NT seq
+upstream
nt +downstream
nt
atgacgggaaatatcggtaaaggggtcacacaatacaaagtaaccgacccttctgatgat
cctctgaaaccaaaacctggaaccctaagatacgcagcaacacttgtcaaaggtaaaaaa
tggatcacattcaagagaaacatgaagatcaagcttcataaaccgcttctaatcagcagc
ttcacgacactcgatggccgaggtgttagtgttcacatctccggtcccgcttgtctcata
gtctacaaagccaccgatgtgatcattcatggacttaagatccatgattgtaaagctcat
cccccaagctcagtgatgggaccagactcaaagatcattcaacttgggcaagtggatggc
gatgccatcaggctggtcacggctaagaaagtatggatcgaccacaacacgctctatgat
tgtgaagacggtcttctagacgtcacacgagggtctactgacgtcacagtgtcgaacaat
tggtttaggaaccaggacaaggtcatgcttcttggccatgatgatggctatgtaagagac
caagacatgagagtcactgttgtgtttaaccactttggtcctaattgcaaccagagaatg
ccaagagtgagacatggatatgctcatgttgccaataactattaccaaggatggactcag
tatgcaattggaggaagcatgagccctcgtgtgaagagtgaatcaaactatttcgtcgca
ccaaagtctggaaacaaagaggtgctggaaaagcacgccctaattacggcccagatcaaa
ggttcacagtcgcaaaagctaaaaccgttaaagaactcacaagttcagctggagccttgc
actgcaccagaaactccgtctgttagagcaactacgcttaacatgactttttag
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