Capsella rubella (pink shepherd's-purse): 17881414
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Entry
17881414 CDS
T02984
Name
(RefSeq) small RNA degrading nuclease 5
KO
K14570
RNA exonuclease [EC:3.1.-.-]
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
17881414
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
crb03009
]
17881414
Ribosome biogenesis [BR:
crb03009
]
Eukaryotic type
Pre-60S particles
RNases
17881414
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_T
ALIX_LYPXL_bnd
YfkB
YMR265C_C
Motif
Other DBs
NCBI-GeneID:
17881414
NCBI-ProteinID:
XP_006287378
UniProt:
R0FEE8
LinkDB
All DBs
Position
Unknown
AA seq
571 aa
AA seq
DB search
MSSSKRKRDSGTAAEDGGESGDGSDKSNTEKSFFDIYGPQAKAELDFKCPDTTLNLQDVQ
GLVTWVLAEGFMPSWVFIKNKPLIPKVVMLYLPGLDAALYLSQSKALASLKSCCGNPIAL
LALSCVVDDIRTIDTILTCKGKKKKTVTSSVEPPPLVSNPEACDLMGKSFIELVKDIPFP
VTYYTLSRKEMELNGYTFEKFEFTPTLPAPSGSSPHEIVALDCEMCFTKEGLELTRVTLV
DVQGQVLLDKLVKPTNPITDYNTRYSGITAVMMEGVTTTLKDIQEEFLKLVFKETILVGH
SLENDLFSLKISHNLVIDTAVLYKHPRGRSYKTKLRILAKKFLAREIQLSESGHDSAEDA
KAAMDLALLKIKHGPDFGLPPEVIRKNLFTILNESGKSTSIIDKINIVKRYASESSNSIP
VSSDDEALSKAMKEVKNNRSQFVWTRFSELNTHFQSSADSPQKLNSRMAEMISLLTCNNN
SSVKKKNNVSLETKEILKKMNDRVQSLYAALPTNAMFIVCTGHGDTSIVQRVRKILNDEN
EIAFDREKVVKVLEELQAQAEVALCFVGIKQ
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcttcaaagcggaagcgcgattccggaaccgccgcggaagatggtggagaaagt
ggcgacggtagtgataagagcaataccgaaaaaagcttcttcgatatatatggacctcaa
gcgaaagcagaactcgatttcaagtgccctgatacaacactgaacttacaagatgttcag
ggacttgtgacatgggttcttgcagaaggttttatgccctcgtgggtgtttattaagaac
aagcctctcattccaaaggttgtaatgctctaccttcctggattggatgcagctttatac
ttatcgcagtctaaagcacttgctagtttgaaatcatgttgtggcaatcctatagcactt
ttagctttgagctgtgtagttgatgacataaggacaattgatacaatccttacttgcaag
ggtaaaaaaaagaaaactgttacgagttcagtggaaccacctcccctagtatctaaccca
gaagcatgcgatctgatggggaagtcgttcattgagctcgtaaaagacataccgttccct
gttacatactatactttaagtagaaaggaaatggaactaaatggatacacttttgagaaa
tttgagtttacccctacgcttcctgcaccatcaggatcatctccccatgaaattgttgct
cttgattgcgagatgtgttttacaaaggagggtttggagttgacgagagtgacactggtc
gatgtccaaggacaggttctattagataaattagtcaagccaacaaatcctattactgat
tacaacacaaggtatagtggaataacagctgtgatgatggaaggagttacaacaactctt
aaagatattcaggaagagttcttaaagctggttttcaaggagaccatattagtcggacat
tccttggaaaatgacttgttttctttgaagatctctcataatctggtgatcgacactgca
gtactgtacaagcatccacgcggtcgatcttataaaaccaaacttcgaattctagcaaaa
aagtttcttgctagagagatacaactatctgaatctggacatgacagcgccgaggatgca
aaagcagccatggatttggcactattgaagataaaacatggacctgattttggtttacca
ccggaagtgataagaaaaaatctcttcaccattttgaatgagagcgggaaatccacttct
atcatcgacaagataaatattgtgaaacgatatgcttccgagtcatccaattcaattcca
gtttcttctgacgacgaagcactttcaaaggccatgaaggaggtaaagaacaatcggtca
cagttcgtttggacacggttctcagaattgaatacacatttccagagcagcgcggatagt
ccacagaaactaaattccagaatggccgagatgatctcattgcttacatgtaacaacaac
tccagcgtcaagaaaaaaaacaatgtttcacttgaaacaaaggaaatcttaaagaaaatg
aacgatagagtccaatccctttacgctgcattacccaccaacgcgatgttcatagtttgc
accggacacggagacacatccattgtacaaagagtgcggaaaatacttaacgatgagaat
gaaatcgcgtttgaccgtgagaaagttgtcaaggttcttgaagagcttcaagcacaagcc
gaagtagctctctgttttgttggtatcaaacagtaa
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