Capsella rubella (pink shepherd's-purse): 17881460
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Entry
17881460 CDS
T02984
Name
(RefSeq) protein SPA1-RELATED 2
KO
K16240
protein suppressor of PHYA-105 1 and protein SPA1-related 2
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
17881460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
crb04121
]
17881460
Ubiquitin system [BR:
crb04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Multi subunit type E3 associated proteins
17881460
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_TEP1_C
EIF3I
WDR55
Pkinase
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_WDR19_1st
Beta-prop_CAF1B_HIR1
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR35_TULP_N
Beta-prop_DCAF4
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
WD40_like
Beta-prop_SCAP
Beta-prop_NUP159_NUP214
Beta-prop_IFT140_1st
WD_LRWD1
PK_Tyr_Ser-Thr
Motif
Other DBs
NCBI-GeneID:
17881460
NCBI-ProteinID:
XP_006286352
UniProt:
R0H3H8
LinkDB
All DBs
Position
Unknown
AA seq
1034 aa
AA seq
DB search
MMEEGSVGDVSRIDEDDVAHLQFKNVDQSFKPENCEIREIKEVQVERDAGSPDCSYGVIA
DFLNGKNGDPLDRIENTPCSSSRLNTNDAGDVVEELTVKTCEGLSMDIVGIPSSRARLEM
NRSQFMQRFPLDGGFPGSSSMSKKEIDRGTPSIWRVAGKMTLPENSTGQLAIAVNGEANE
HLTNVERNPVPVEALFHEGIKTKSISQSGFSQFFVRKTLKGKGITVRGPPHNKSKATNVD
PQTLASSGPSVISNTSANVSSSIPLAAYDSLPRLPSNSSKPSSCANPSDIHNGCGGEGLS
LREWLRLERQEVNKAECMYIFRQIVDLVDCFHSQGVVLCDLRPSLFKIFKENAVKYVGSG
SQQESFDRNMNKETVSQLENPLVRRRSGDCTIPCIPAKKQKSGGPSSRKWPMFQRAGGVN
IQTENGDGTIHEFHSKSSQPHCSTATRPSTSMSDQLEEKWYASPEELRGETRSASSNIYS
LGILLYELLSQFQCERAREAAMSDIRQRILPPKFLSENPKEAGFCLWLLHPESSSRPSTR
DILQSEVVNGIPDLYAEGLSLSIEQEDTESELLQHFLFISQDKRQKHAGKLMEEIGSLEA
DIEEIVKRRCALRPLSLQEASSLSPASSVPEMRLIRNINQLESAYFASRIDAHLPEARYR
LRPDRELLRNCDNTVAEVENSETWSSDDRVGAFFDGLCKYARYSKFETRAVLRTSELNNT
SNVICSLGFDRDEDYFATAGVSKKIKIFEFNSLFNESVDIHYPAVEMPNRSKLSGVCWNN
YIRNYLASSDYDGIVKLWDVTTGQAISHFIEHEKRAWSVDFSEACPTKLASGSDDCSVKL
WNINERNCLGTIRNIANVCCVQFSPQSSHLLAFGSSDFRTYCYDLRNLRTPWCILSGHNK
AVSYAKFLDNETLVTASTDNTLKLWDLKKTTHGGLSTNACSLTFGGHTNEKNFVGLSTSD
GYIACGSETNEVYAYHRSLPMPITSYKFGSIDPISGKEIEEDNNLFVSSVCWRKRSNMVV
SASSNGSIKVLQLV
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atgatggaggaaggatcagtaggggatgtgagtaggattgatgaagatgatgttgctcac
ctccaatttaagaatgttgaccaatcgtttaaaccggaaaactgtgaaatcagggaaatc
aaagaagtgcaggttgagagagatgcgggatctcctgattgttcgtatggtgtaatagca
gattttttgaatggtaagaatggtgatcctttggaccgaatagaaaatacaccatgttct
tctagccggctgaatacaaatgatgcgggcgacgttgttgaggagttgactgttaaaact
tgtgaaggattgagcatggacatagttggtataccaagtagtagggctagattagagatg
aatcgcagtcagtttatgcaacgctttcctctagatggtggtttccctggtagcagttct
atgagtaagaaggaaattgacaggggaacaccaagcatctggagagttgcaggcaaaatg
actttgccagagaattcgactggtcaactggccattgctgttaatggtgaagctaatgaa
catttgacaaatgttgaacgaaatcctgtaccagtagaggcattgttccacgaaggcatc
aagacaaagagtatatcgcagtcagggttttctcagttttttgttaggaaaacattgaaa
ggcaagggaatcacagtcagaggcccgccacacaataaatcaaaagctaccaatgtggat
ccgcaaactctagctagttctggcccttcagtaatatcaaatacttcagcaaatgtttct
agcagcatccctttggcggcttatgatagtttgccgcgcttgccttccaattctagtaaa
ccatcttcttgtgctaacccttcagatatacataacggttgtggaggtgaaggtttaagt
ctgagagaatggttgaggttggagcggcaggaagttaataaagcagaatgtatgtatatc
tttaggcagattgtggatcttgtggattgctttcattctcaaggagttgttttatgtgac
ctacgcccatctttattcaaaattttcaaagaaaatgcagtcaagtatgtcggttcaggt
tctcaacaagagtcttttgacagaaacatgaacaaagagactgtaagtcaactcgaaaac
cctctggttagaaggcggtcaggagattgtactattccctgtatccctgcaaagaagcag
aaatcaggtggaccaagctcgagaaagtggcctatgtttcaacgagctggtggcgtaaat
atccaaactgaaaatggtgacggtacaatacatgagtttcattccaaatctagccaacct
cattgtagtacagctacccgtccttctacttctatgagtgatcagttggaagagaaatgg
tatgcgagtcccgaggagctcaggggtgaaactcgctcagcctcttcaaacatctatagt
ttgggtattcttctttatgagttgcttagtcaatttcaatgtgaaagagctcgcgaggct
gcaatgtctgacatccgacagcgaattcttcctcccaaatttctctcagagaatccaaag
gaagctgggttttgtctttggttacttcatccagaatcttcatcccgaccatcaaccagg
gacatcttacaatctgaagtggtcaatggaatcccggatttatatgctgaaggcttatcg
ttatccattgaacaagaggacacagagtctgaactgctgcagcatttcctttttatatcc
caagataagaggcagaagcatgctgggaagttaatggaagaaattgggtccttagaagca
gatattgaagaaattgtcaagagacgctgtgccctacggcctctgtctctgcaagaagct
tctagcttatctcctgcttctagtgtacctgaaatgagactgatcaggaacattaatcag
cttgaaagcgcttatttcgcatcaaggatagatgcccatctccctgaagcacgctacagg
ttacgcccggatagagaactgctaagaaattgcgataatactgtagcagaagtagaaaac
agcgagacttggagctcagatgatcgtgtaggagcgttctttgatggattatgcaaatat
gctcgatatagtaagtttgaaactcgcgctgtgctgaggaccagcgagttgaacaacact
tcaaatgtgatttgttctctgggatttgatcgggacgaggattattttgctacggctggt
gtgtctaagaaaattaagatatttgagttcaattccctattcaacgaatctgtcgacatt
cattatccagctgtagaaatgccaaatagatcaaagcttagcggcgtttgctggaacaac
tacatcaggaactacctagcttcctctgattatgatggtattgtcaagttatgggatgtg
acaacaggacaggccatttcacatttcatagagcacgagaagagggcttggtctgttgac
ttctctgaagcttgtccgacaaaattagccagtggtagcgatgattgttctgtgaagcta
tggaacatcaatgagaggaactgcttaggaacaattaggaacattgcaaacgtgtgttgt
gtgcaattttctccacagtcatctcatttgctagcctttggatcatcagatttcagaacg
tactgctatgatctacgaaatttaagaactccttggtgtatactgtcaggacacaacaaa
gcagttagctacgcaaaatttttggataatgaaacccttgtcactgcatcgactgataac
acgctaaagctttgggatcttaagaaaaccactcacggtggcctctcaacaaatgcttgc
agcttaacttttggtggccatacaaatgagaagaactttgttggcttgtctacttcggat
ggatatatagcttgcggctctgagacaaacgaggtttatgcctaccatcggtctcttcca
atgcccattacctcgtacaaatttggttctattgatcctatatcaggtaaggagattgaa
gaggacaacaacctattcgtttcaagtgtttgctggagaaaacgatcgaacatggttgtt
tcagctagctcaaatggatctatcaaagttctacagttagtctga
DBGET
integrated database retrieval system
