Capsella rubella (pink shepherd's-purse): 17881503
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Entry
17881503 CDS
T02984
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 46 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
17881503
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
crb03041
]
17881503
03009 Ribosome biogenesis [BR:
crb03009
]
17881503
Enzymes [BR:
crb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
17881503
Spliceosome [BR:
crb03041
]
Complex A
U1 snRNP components
U1 related factors
17881503
Complex B
17881503
Ribosome biogenesis [BR:
crb03009
]
Eukaryotic type
Pre-60S particles
Helicases
17881503
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
17881503
NCBI-ProteinID:
XP_023637109
LinkDB
All DBs
Position
Unknown
AA seq
637 aa
AA seq
DB search
MAATATASTIRYAPEDPNLPKPWKGLVDSRTGYLYFWNPETNVTQYERPASSTPPKLAPT
PLSSSVQTQQSSSGLSSGKENSGSDGPKSDSGSRFTEQAGRTGPISSNVAASGPVKAGGP
PSSATGNELSPEAYCRRHEITVSGGQVPPPLMSFEATGLPPELLREVYSAGFSSPSPIQA
QSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDPQMGPTILVLSPTRELATQI
QVEALKFGRSSKISCACLYGGAPKGPQLKEIERGVDIVVATPGRLNDILEMRRISLHQVS
YLVLDEADRMLDMGFEPQIRKIVKEVPTKRQTLMYTATWPKEVRKIAADLLVNPAQVNIG
NVDELVANKSITQTIEVLAPMEKHTRLEQILRSQEPGSKIIIFCSTKRMCDQLARNLTRT
FGAAAIHGDKSQAERDDVLNQFRSGRTPVLVATDVAARGLDVKDIRVVVNYDFPNGVEDY
VHRIGRTGRAGATGLAYTFFGDQDAKHASDLIKILEGANQKVPPQVREMATRGGGGMNKF
RRWGPPSSGRGDSGYGGRGDSGYGGRGESGYGGRGDSGYGGRGDSGGRGSWGSRDSSSSS
GWGRERSRSPERFSGGPPSSTSEPPRSFHEMMMMKHR
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atggctgctacagctactgcttctacaatccgttacgcacctgaggatcctaatcttcct
aagccatggaaaggtcttgtggatagtagaactgggtatttgtacttttggaatccagag
accaatgttactcagtacgagagacctgcttcttccactccccccaagcttgctcctact
ccattaagctcttcggttcagactcagcaatcttcttccgggttaagctctggcaaagaa
aatagcggcagtgatgggcctaagtctgattctggatcaaggttcactgagcaggctgga
agaactggaccaatatcttctaatgttgctgctagtggaccagtgaaagctggagggcct
ccttcttcagccacaggaaatgaattgtccccagaggcctattgccgtcgccatgaaatt
actgtcagtggaggccaagtgccaccacctctgatgtcttttgaagccactggtcttccc
ccagagcttctgcgggaggtatacagtgcaggattctcttctccgtctccaattcaagct
cagtcgtggccaattgcgatgcaaaacagagacatagtagcaattgctaaaacaggctct
ggaaaaactcttggttacttgattcctggttttatgcatctccaacggatccacaatgat
ccacaaatgggcccaacgatcttggtattatcacctactagggagttggccacacaaatc
caagttgaagctctgaaatttggcaggtcatccaaaatttcgtgtgcgtgcttgtatggt
ggagcacccaagggtcctcagctgaaggaaatagaaagaggtgtagatattgttgttgca
actcccgggcggctgaatgatatacttgaaatgaggagaatcagtctgcatcaagtatct
tatcttgtgctagacgaggctgatagaatgttggacatggggttcgagcctcagatcagg
aaaattgtgaaagaggttcccactaagcgtcaaaccctcatgtacacagcaacatggcct
aaggaggtcaggaaaatcgcagctgatcttcttgttaaccctgcccaggtcaacattggt
aatgttgatgagcttgtggcgaacaagtccattactcagactattgaagtcctagcacct
atggagaaacatacaaggttagagcagatactgcggtctcaggaaccgggatccaagatt
attattttttgttcaaccaaaaggatgtgtgatcaactagcacggaatctgacccgcacg
tttggagctgctgctatacatggagacaagtctcaggctgagagagatgacgtgctgaac
caatttagaagtggtaggactcctgttcttgttgcaaccgatgtagctgctcgtggactt
gacgtgaaggacatcagggtggtggtcaactatgattttccaaatggagttgaggactat
gtccatagaatcggaagaactggaagagctggagcaaccggcttggcttacaccttcttt
ggggaccaagatgcaaaacatgcttcagatttgatcaagatcttggaaggagcaaatcag
aaagttcctccacaggtccgtgaaatggctacacgtggtggtggtgggatgaacaaattc
cgccgctggggtccaccttctagtggccgtggagattctggttatggtggtcgtggagat
tctggttacggtggccgtggtgagtctggttatggtggtcgtggtgattctggctatggt
ggtcgtggagattctggtggtagaggaagctggggttcacgtgacagcagtagcagctcg
ggatggggaagagagagaagccgtagtccggagagattcagtggaggtccaccgtcttcc
acttctgaaccacctcgcagctttcacgagatgatgatgatgaaacataggtaa
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