Capsella rubella (pink shepherd's-purse): 17881607
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Entry
17881607 CDS
T02984
Name
(RefSeq) LOW QUALITY PROTEIN: probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
17881607
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
crb03041
]
17881607
03009 Ribosome biogenesis [BR:
crb03009
]
17881607
Enzymes [BR:
crb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
17881607
Spliceosome [BR:
crb03041
]
Complex A
U2 snRNP components
U2 related factors
17881607
Complex B
17881607
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
17881607
Ribosome biogenesis [BR:
crb03009
]
Eukaryotic type
90S particles
Helicases
17881607
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
ABC_tran
nSTAND3
SRP54
AAA_7
PhoH
TsaE
ATPase
AAA_30
T2SSE
AAA_29
AAA_16
AAA_23
NB-ARC
AAA_24
Motif
Other DBs
NCBI-GeneID:
17881607
NCBI-ProteinID:
XP_023637724
LinkDB
All DBs
Position
Unknown
AA seq
685 aa
AA seq
DB search
MNPYPKRKIRIETTKKTYSARYVEILEKWKKLPVWVHKEEFLKTLKENQIVLLVGETGSG
KTTQIPQFVLEAVLNENTSDPNYGKKWLVGCTQPRRVAAMSVSRRVAEEMDVEIGEEVGY
TVRFEDCTSSKTVLKYLTDGMLLREAMADPLLGRYKVIVLDEAHERTLATYLLFGLLKQT
LVRRPDLKLVVMSATLEADKFHKYFTGVPLIKVPGRLHPVEILYTREPQRDYLEAAISTV
IQIHMCEPPGDVLVFLTGEEEIEDACRRITRNLGDHVNVLPLYSTLSPAMQQKIFEPTPD
QVRKVVVSTNIAETSLTIDGIVYVVDPGFSKQKLYHPDTRVESLLVSPISQASADQSAGR
AGRTRPGKCFRLYAEKSFNELEKQTYAEILRSNLANTVLNLKRLGVENLLRFDLMDSPAP
ETLARALDDLYHLQALDDECNLTKTGEMMSEFPLDPQMAKMLIVSPQFNCSNEILSISAM
LSVPNCFIRPRGEAQKAADEAKSSFAHIYGDHLTLLNVFHAFLQNNQDPDWCYENFINYR
KMKSAVSVREQLVRIMLRFQIKLCSPDFNSKDYYVNIRKALLSGYFMQVAHLERTGHYLT
FRDKDDQVVHLHPSNCLDHKAEWVIYNEYVFTTRNFIRTVTYIRGEWLVDVAPHYYKLAN
FPNSEAKRVLQRHFKKRRLSEERSC
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atgaatccttatccaaaaagaaagataagaattgaaacgacgaagaagacctattctgca
aggtatgttgaaatacttgagaaatggaagaagttaccagtgtgggtgcacaaagaggag
tttctcaaaactttaaaagagaatcagatcgtgttattggtgggtgagaccggaagtggt
aaaacaacgcagatcccacagtttgttttagaagcagtgctcaatgaaaacacctctgat
cctaattatgggaagaagtggttggttggatgcacgcagcctcgtagagttgcagccatg
tccgtgtcccgtcgtgtagctgaggagatggatgtagagatcggtgaagaagttggttac
acggtccgtttcgaggattgcaccagctccaaaacggtgctcaagtatttgacagatggt
atgcttctgcgagaagcaatggcggatccgctcttagggagatacaaagtgattgttctc
gatgaggcgcatgagagaactttagcgacgtatttgctttttggtcttcttaaacaaacc
ttggttaggagacctgatcttaagctggttgtgatgagtgcaaccctagaagcagacaag
ttccataagtattttactggtgtgcctcttatcaaagtccctggtaggcttcatccagtg
gagattttgtatactcgagaaccccagagggactatctcgaggctgctatcagtactgtt
atccagattcacatgtgtgagccacctggtgatgttcttgttttcttaaccggggaagaa
gagattgaagatgcttgcagaagaatcacccgtaaccttggtgatcacgtcaatgttttg
ccattgtattccactctttcgcctgctatgcaacagaagatattcgaaccaacaccggat
caagtgagaaaggttgttgtctccaccaacattgcagagacttctttaaccatagacggg
attgtttatgtggttgatcctggtttctccaagcagaagctctaccacccagacactcgc
gttgagtccttgttggtgtctccaatatcacaggcaagtgctgaccagagcgcaggtcgt
gctggtagaacacggcctggaaaatgtttcaggctttacgcagagaaaagtttcaatgaa
ttggagaagcagacgtatgctgagatattgagatcaaaccttgcaaatacagttctgaac
ttgaaaagacttggtgtggaaaacttgctgcgcttcgatcttatggattcccctgctcct
gagaccctcgctcgggccttggatgatttgtatcatttgcaggcactggatgatgaatgt
aacttgacaaagacgggcgagatgatgagtgagtttccattagacccacagatggcaaag
atgctcatagtaagtcctcagttcaattgctcaaacgagattctttcaatttccgcaatg
ctttcagtacctaattgttttatcaggccaagaggagaagctcaaaaagcagcagatgaa
gctaaatctagttttgcacacatttacggagatcacctcacactcttgaatgtatttcat
gctttcttgcaaaacaaccaagacccagattggtgctatgaaaacttcatcaactacaga
aaaatgaagtctgcagttagtgtaagagagcagctggtccggatcatgttaaggtttcag
attaagttgtgcagccctgatttcaacagcaaggactactacgtcaacataagaaaggcc
ttgctttctggttatttcatgcaagtggctcacctagaacgaactggccactacttgact
tttagagataaggacgaccaagtggttcacttgcatccttccaattgcttggatcacaaa
gcagagtgggtgatttacaacgaatatgttttcactacacgaaatttcatccgcactgtc
acatatattcgcggtgaatggctagtagatgttgcaccgcattactataagcttgccaac
ttccccaactcagaggctaaacgagtccttcagagacactttaagaagagaagattatca
gaagaaaggagttgttaa
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