Capsella rubella (pink shepherd's-purse): 17882099
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Entry
17882099 CDS
T02984
Name
(RefSeq) LOW QUALITY PROTEIN: paired amphipathic helix protein Sin3-like 2
KO
K11644
paired amphipathic helix protein Sin3a
Organism
crb
Capsella rubella (pink shepherd's-purse)
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
crb03036
]
17882099
Chromosome and associated proteins [BR:
crb03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
Sin3A-HDAC complex
17882099
REST complex
17882099
Heterochromatin formation proteins
Other heterochromatin formation proteins
17882099
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sin3a_C
PAH
Sin3_corepress
PAH_ZNF598
DUF7628
LinB-like_C
Motif
Other DBs
NCBI-GeneID:
17882099
NCBI-ProteinID:
XP_023637570
LinkDB
All DBs
Position
Unknown
AA seq
1348 aa
AA seq
DB search
MKRIRDDIYATGSQFKRPLGSSRGESYGQPPIPGNGGTGGGIIDDGEINAQKLTTDDALT
YLKEVKEMFQDQRDKYDMFLEVMKDFKAQRTDTSGVIARVKELFKGHNNLIFGFNTFLPK
GFEITLDEEEEEAPPKKTVEFEEAISFVNKIKKRFQHDEFVYKSFLDILNMYRKDNKDIT
EVYSEVSTLFEDHSDLLEEFTRFLPDSLAPHTAAQLLRSQAQRYDDQGSGPPLVRRMFVE
KDRRRERSVASRGDRDHSVDRSDLNDDKAMVKMHRDQRKRVDKDNRERRSRDLEDGEAEQ
DNLHHISEKRKSSRRTEGFEAYSGPASNSEKNNLKSMYNQAFVFCEKVKESLCSQDDIEM
HEECLEVWRKTCXNWVQNMLRIWKHLLDEFNQFFERCESIDGFQHLAGIMSKKSLSSEEH
LSRSMKGEEKEREHKRDLEAAKEKERSKDKYMGKSIQELDLSDCERCTPSYRLLPPDYPT
PSVRHRQKSGAAVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVG
SAAKSTEELLNIIIEKKLSFEGSFRIEDHFTALNLRCIERLYGDHGLDVTDIIRKNPASA
LPVILTRLKQKQEEWTKCREGFNVVWADVYAKNHYKSLDHRSFYFKQQDSKNLSAKALVS
EIKDLKEKSQKEDDILLSISAGYRQSIIPQLKYEYIDRTIHDDLFNLVQFSCEEICSSKE
QISKVLRLWVNFLELMLGVPPRSKGTDSVDVVVETKHHSAFTSREANVSSDAISMVSRQR
KLAANGDEHASSGVSKHGGTGLLNKDSSGKENCKDGDPANKDVATCAEKPQKDREIGIGA
DKRSGDVDERVVTSCETFPSGVENSNDKVRSGDLSGSRGVLSTPSEAIDKVDTIQRTQGG
DIARTIVSANGLQSGDCKAKSDYNDSGGPAKIEKEEGELSPIGDCEDNFVVYEDHGVNTT
AKSEHSVEAEGQNDDEDGDDASEAGEDASGTESIGDECSQEDNGVEEEGEHDEIDGKAES
EGEAEGIESHLIEEDKGLFPSSERLLLSVKPLSKHVAAAALLDERNKECRVFYGNEDFYV
LFRLHRILYERILSAKTYCTGSEMKLRNTKDTSSPDPYARFMNALFSLLNGSADNSKFED
ECRAIIGNQSYVLFTLEKLIYKLVKQLQAVVADDMDNKLLQLYEYENSRKHGSVVDSVYY
ENARILLHEDTIYRLECSSSPPCLSIQLMEKITEKPEAYAVSMDPTFASYLQNEFLSYAS
GKKVLQDIVLQRNMLGYTGLDDLAVACKAMEGVQVINGLECKMSCSSYKISYVLDTQDFF
HRKKKQKKSKNLSQKRIERFHKFLAASR
NT seq
4047 nt
NT seq
+upstream
nt +downstream
nt
atgaagcggattagggatgatatttacgcaaccgggtctcagtttaaacgtcctttgggg
tcttctcgtggcgaatcatatgggcaacctccaatacctggaaatggtgggactggagga
gggatcattgacgacggggaaattaatgctcagaaactgacaaccgacgatgctttgacg
tacttaaaagaagtaaaggagatgtttcaagatcaaagggacaaatatgatatgttcctt
gaggttatgaaagacttcaaggcgcaaaggaccgatacatctggtgtgattgcacgagtg
aaggagttgtttaaggggcataacaatttgattttcggctttaatacctttttgccaaag
gggtttgaaataacacttgatgaagaagaagaagaagctccaccaaagaaaactgttgaa
tttgaagaagccataagttttgtaaataaaattaagaaacggttccagcacgatgaattt
gtctataagtctttcctggatatcttaaatatgtatcggaaggataataaggacatcact
gaggtttacagtgaggtttcaactctttttgaggaccactcggatttgctcgaagaattt
actaggtttttgccagactcgttggcccctcatacagcagcccagttactccggagtcag
gcccaacggtatgatgaccaaggatctggccctcctcttgtgcgtagaatgtttgtagag
aaggatcgtcgacgagaaaggtctgttgcttctcggggtgaccgtgatcatagtgttgac
cgttctgaccttaatgatgataaagcaatggttaagatgcacagagatcagaggaaacgt
gttgataaggataatagagaaaggagaagccgtgatttggaagatggagaagcagagcaa
gataacttgcaccatatttcagaaaaaagaaagtcatctagaagaactgagggttttgaa
gcttattctggtcctgcttcgaattctgagaaaaacaatctaaagagcatgtacaatcaa
gcatttgtgttttgtgagaaagttaaggagagtttatgcagccaagatgatatagagatg
catgaagagtgtttagaagtgtggagaaagacttgttgaaattgggttcagaatatgcta
agaatttggaaacatttgctagatgagttcaatcagttcttcgaacgttgtgagagtatt
gatggtttccagcaccttgctggtattatgagcaaaaaatcacttagcagtgaagaacat
ttatctaggtcaatgaagggggaggaaaaagaaagagaacacaaacgtgaccttgaggct
gctaaggaaaaggagcgatccaaggacaagtacatggggaaatctattcaagagcttgat
ctatctgattgtgagcgttgcactcctagctaccggctcctccctcccgattatccaaca
ccgtcggtgcgccacagacaaaagtcaggagctgctgtgttaaatgatcactgggtttct
gtcacttcaggaagtgaagactactcttttaaacacatgcgcagaaaccagtatgaagag
agcttgtttagatgtgaagatgatagatttgagttagatatgttgttggaatctgtggga
tctgctgccaaaagtacagaagaattgttaaatatcatcattgagaagaaattaagtttc
gagggctccttccggattgaagaccacttcacagccctaaatttaaggtgcatagagagg
ctttatggtgaccatggtcttgacgtgacagacataatacgtaagaatccagcctctgca
cttcctgtaatcctgactcgattgaagcagaaacaagaagaatggacaaaatgccgggaa
ggttttaatgtggtctgggcggatgtgtatgcgaaaaaccattacaaatcacttgatcat
cggagcttctattttaagcagcaagattccaagaacttgagtgcaaaagcgctggtgtct
gaaatcaaggacttgaaagagaagtctcaaaaagaagatgatattcttctgtctatatct
gctggttacagacaatcaataattcctcaactcaagtatgaatatatcgacagaactatt
catgatgatctgttcaatctagtccaattttcgtgtgaggagatatgttcttcaaaagag
cagatcagtaaagtcctgaggctctgggttaatttcctggagctgatgcttggtgttcca
cccaggtctaaggggacagattctgttgacgtagttgtagaaaccaagcatcacagtgca
tttaccagcagggaggctaatgtgagttctgacgcgataagtatggtttccaggcaacga
aaattggctgctaatggagatgagcacgcttcttctggggtctccaaacatggcgggact
ggtttgttgaataaggattcttcagggaaagaaaattgtaaggatggtgatcctgctaat
aaagatgttgccacctgtgctgaaaaaccccaaaaagatcgagaaattggaattggagct
gataaaagatctggagatgttgatgaaagagtggtcacgtcatgtgaaactttcccaagt
ggggtagaaaacagtaatgacaaagtaagaagcggtgatttgtcaggttcacgaggcgtt
ttatccacaccaagtgaagctatagataaagttgataccattcaacgtacgcagggaggt
gatattgccagaactatagtttcagcaaatggactgcagtcaggtgattgtaaagctaag
agtgattataatgactctggtggtccagccaaaattgagaaggaggaaggtgaattatca
cctattggtgattgcgaagacaactttgttgtttatgaagatcatggtgtgaatactact
gccaaatcagaacattcagttgaagctgaaggacaaaatgatgatgaggatggtgatgat
gcttcagaagctggtgaggatgcgtcggggacggaatctattggtgacgaatgttcacag
gaagataatggcgtggaggaagagggtgagcatgacgagattgatggcaaagctgaaagt
gaaggagaggcagagggaatagagtcacatcttatagaagaagacaaagggttgtttcca
tcatcagaacgacttctattatcagttaagcctctttcaaagcatgtggctgcagcggct
ttgcttgacgagagaaataaagaatgcagagttttctacgggaatgaagacttttatgtt
cttttcaggcttcatcgaatcctgtacgagagaattttgtctgcaaaaacatattgtaca
ggaagtgaaatgaaactgcgaaacacgaaagatacaagttcaccagatccttatgcaagg
tttatgaatgcgctgtttagtctgcttaatggctcagctgataattccaagtttgaggat
gaatgccgagctattattggaaaccagtcatatgttttattcaccctggaaaaattgata
tacaaattggttaaacagcttcaagctgttgtagctgacgatatggacaataagcttctt
cagttgtatgagtatgagaattcccgtaaacatgggagtgtagttgactcggtatattat
gaaaacgccaggatcctccttcatgaggatactatttatcggttggaatgttcttcctct
ccaccttgtttgtcaatccagcttatggagaagataaccgaaaagcccgaggcttatgca
gtttccatggatcccacgtttgcaagttatttgcaaaatgagtttctctcctacgcatca
gggaagaaagtactacaagacattgtattacagaggaacatgcttgggtacactggtctg
gatgatcttgcagtagcttgcaaggccatggaaggtgtacaagtaatcaatggccttgag
tgcaagatgtcttgctcgtcctacaagatttcgtatgttttggacacacaggatttcttc
cacaggaagaagaagcagaagaagagcaagaacttgtcacagaaaagaatagaaagattc
cacaaatttctagcagcttcaagatga
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