Capsella rubella (pink shepherd's-purse): 17882339
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Entry
17882339 CDS
T02984
Name
(RefSeq) probable mediator of RNA polymerase II transcription subunit 37e
KO
K03283
heat shock 70kDa protein 1/6/8
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb03040
Spliceosome
crb04141
Protein processing in endoplasmic reticulum
crb04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
17882339
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
17882339
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
17882339
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
crb01009
]
17882339
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
crb03041
]
17882339
03009 Ribosome biogenesis [BR:
crb03009
]
17882339
03110 Chaperones and folding catalysts [BR:
crb03110
]
17882339
04131 Membrane trafficking [BR:
crb04131
]
17882339
03051 Proteasome [BR:
crb03051
]
17882339
03029 Mitochondrial biogenesis [BR:
crb03029
]
17882339
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
crb04147
]
17882339
Protein phosphatases and associated proteins [BR:
crb01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-5
PP5-interacting proteins
17882339
Spliceosome [BR:
crb03041
]
Complex B
Other components
Prp19 complex
17882339
Complex C
Prp19-CDC5 complex
17882339
Ribosome biogenesis [BR:
crb03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
17882339
Chaperones and folding catalysts [BR:
crb03110
]
Heat shock proteins
HSP70 / DNAK
17882339
Membrane trafficking [BR:
crb04131
]
Endocytosis
Clathrin-mediated endocytosis
Other core components
17882339
Autophagy
Chaperone mediated autophagy (CMA)
Chaperones
17882339
Proteasome [BR:
crb03051
]
Eukaryotic proteasome
Assembling factors
Other assembling factors
17882339
Mitochondrial biogenesis [BR:
crb03029
]
Mitochondrial protein import machinery
Endoplasmic reticulum membrane and cytosol
Other ER-memrane and cytosol factors
17882339
Exosome [BR:
crb04147
]
Exosomal proteins
Proteins found in most exosomes
17882339
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HSP70
MreB_Mbl
FGGY_C
EcsC
Hydantoinase_A
Motif
Other DBs
NCBI-GeneID:
17882339
NCBI-ProteinID:
XP_006287234
UniProt:
R0FDB4
LinkDB
All DBs
Position
Unknown
AA seq
651 aa
AA seq
DB search
MSGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDSERLIGDAAKN
QVAMNPVNTVFDAKRLIGRRFSDSSVQSDMKLWPFKILPGPADKPMIYVNYKGEEKQFAA
EEISSMVLIKMREIAEAYLGVSIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEP
TAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFD
NRMVNHFVQEFKRKSKKDITGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFY
STITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFF
NGKELCKSINPDEAVAYGAAVQGAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTTLI
PRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELSGIPPAPRGVPQI
TVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKSEDEEHKK
KVEAKNALENYAYNMRNTIQDEKIGEKLPAADKKKIEDSIEQAIQWLEGNQLAEADEFED
KMKELESICNPIIAKMYQGAGGEAGGPGAGGMDDDAPPASGGAGPKIEEVD
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atgtctggtaaaggtgaaggtcccgcgatcggtatcgatctaggtactacttactcttgc
gttggagtatggcaacacgaccgtgttgagatcattgccaatgatcaaggaaacagaacc
accccatcttacgtagctttcaccgactccgagaggttgatcggtgatgccgctaagaat
caggtcgccatgaaccctgttaacacagttttcgacgctaagaggttgatcggtcgccgt
ttcagcgacagctctgtccagagtgacatgaaattgtggccattcaagattcttccagga
cctgccgacaagccaatgatctacgtcaactacaagggtgaagagaaacagttcgctgct
gaggagatctcttccatggttcttattaagatgcgtgagatcgctgaggcctaccttggt
gtctctatcaagaacgccgttgtcactgttcctgcctacttcaacgactctcagcgtcaa
gccacaaaggatgctggagttattgctggtttgaacgttatgagaatcatcaatgagccc
acagccgcagctattgcctacggtcttgacaaaaaggcaacaagcgttggagagaagaac
gttcttatcttcgatcttggtggtggtacttttgatgtctctcttcttaccattgaagag
ggtatctttgaggtcaaggcaacagctggtgacacccatcttggtggggaagatttcgac
aacagaatggtcaaccacttcgtccaagagttcaagaggaagagcaagaaggacatcact
ggtaacccaagagctcttaggaggttgagaactgcctgtgagagagcaaagaggactctt
tcctccactgctcagaccaccatcgagattgactctctatacgagggtattgacttctac
tccaccatcacccgtgctagatttgaggagcttaacatggatctctttaggaagtgtatg
gagccagttgagaagtgtctccgtgatgctaagatggacaagagcactgttcacgatgtc
gtccttgttggtggttccacccgtatccctaaggttcagcaattgcttcaggacttcttc
aacggcaaagagctttgcaagtctataaaccccgatgaggctgttgcatatggtgctgcc
gtccagggagctattctcagtggtgaaggaaacgagaaggttcaagatcttctgttgctc
gatgtcactcctctctcccttggtttggaaactgccggtggtgtcatgaccactttgatc
ccaagaaacacaacaatcccaaccaagaaggagcaggtcttctctacctactcagacaac
cagcctggtgtgttgatccaggtgtacgaaggagaaagagccagaaccaaggacaacaac
cttctcggtaaatttgagctctccggaatcccaccggctccacgtggtgtgcctcagatc
acagtgtgctttgacattgacgccaatggtatcctcaacgtttctgctgaggacaagacc
accggacagaagaacaagattaccatcaccaatgacaagggtcgtctctccaaggatgag
attgagaagatggttcaagaggcagagaagtacaagtctgaggatgaggagcacaagaag
aaggttgaagccaagaacgctcttgagaactacgcttacaacatgaggaacaccatccag
gacgagaagattggtgagaagcttcccgcagcagacaagaagaagatcgaggactctatt
gagcaggcgattcagtggctcgagggtaaccagttggccgaggcagatgagtttgaagac
aagatgaaggagttggagagcatctgcaacccaatcatcgccaagatgtaccaaggagct
ggtggtgaggccggtggaccaggtgctggtggaatggacgatgatgctcctcctgcttca
ggcggtgctggacctaagatcgaggaggtcgactaa
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