Capsella rubella (pink shepherd's-purse): 17882497
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Entry
17882497 CDS
T02984
Name
(RefSeq) symplekin isoform X3
KO
K06100
symplekin
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
17882497
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
crb03021
]
17882497
03019 Messenger RNA biogenesis [BR:
crb03019
]
17882497
Transcription machinery [BR:
crb03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
17882497
Messenger RNA biogenesis [BR:
crb03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
17882497
U7-dependent histone pre-mRNA processing factors
17882497
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
HEAT
HEAT_2
HEAT_EZ
Adaptin_N
Motif
Other DBs
NCBI-GeneID:
17882497
NCBI-ProteinID:
XP_006286894
UniProt:
R0FCH2
LinkDB
All DBs
Position
Unknown
AA seq
1456 aa
AA seq
DB search
MVGIMASYSRERLEGLASSAKSATELPPKLQRLRNLRRDLQRDEPVFPTELLPHLFDLLS
DQFGAVRKFVAEILGEIGLKYVELLPEIVPILIKSLEDETPAVARQVISCGADLFRSTLE
KVAVQGLHSSELNDLLESSWTWMIKVKDEICSVAFKQGNSGVKLCAMKFVEGLILLYTPH
EGSEADFNITILRGGHPVLNIGDLSIEASQKLGLLLDQLRHPAAKSLNSSTIVVLINSLS
SVARKRPAYCGRILPVLLSLDPLSFLKGVHGAAANLALKTVFLSYLKCTHPAAAPWKDRL
IGALKEIEGGCRAGKAKDIFYKTNGSIQDKDSTEDTKVSVDDNPLCASSDVAESNFGRKR
SGSEYNIDLNGDALNGKRARITPSVSEESTDGLNGNDGGSLPRVAATSTGPSNSRGVSDT
GPVQQLVDMFGTLVAQGEKAIGSLEILIKSISADLLTDVVMANMHNIPPNGSSYADGTNE
LVMNMGIVGSDAQIKYPPSFVAAVLSLSTAFPPIAALINPRIPKTENEDEEVFAVHVDQQ
MFPAEDAVLETGLLASSDASFPENEDDSNVFPPNVHYIKNIESGIPGLVSSAQLDDSTMN
VETATKNQNASFSGNLLVDAIPSMSVDKSEEFSPKAAATDSTSLVLSTATSVASAPQFVL
PKISAPVVDLSDEEKDSLQKLVFLRIVEAYKQISMSGGSQLRFSLLAHLGVEFPSELDPW
KILQEHVLSDYLNHEGHELTVRVLYRLYGEAEAEQDFFSSTTAASAYESFLLTVAEALRD
SFPPSDKSLSKLLGDSPHLPKSVLKLLESFCCPGSGEEVQKDLQNGDRVTQGLSAVWSLI
LMRPGIRSDCLKIALQSAVHHLEEIRMKAIRLVANKLYSISFITQQIEEFAKNSLFSVVS
CISSERGDAETRIDDCNKKDLDLKSPPNKPQPVISGMDMPSEATSSASLSEAQRCLSLYF
ALCTKKHSLFVHVFSIYKNASDPVKQAIHLQIPILVRTMGSSSELLKIIGDPPSGSENLL
MQVLQTLTEGPTPSSELVLTIRKLFDTRIKDVEILFPILPFLPRDDVLRIFPHMVNLPME
KFQVALSRVLQGSSQSGPVLSPSEVLIAIHSIDPARDGIPLKQVTDACNTCFAQRQTFTQ
QVLASVLNQLVQQIPLPMLFMRTVLQAIGAFPALSDFILEILSRLVSKQIWKYPKLWVGF
LKCVQTTQPQSYKVLLQLPSPQLGNALTKISALRAPLTAHASQPEIQSSLPRSTLVVLGL
VPDSQGTQTSHVQANETQTSREQQQQQASESQQTSQSEQFSLPLSPSKTDHQEPSQVVAS
QSQNSPIGTGRSEISQSQNSPIGTGGSEMSQSQNSPIVTGLSEMSQSQSSPVGMGRSETS
QSQSSPVGTGQSEMGQSVQVSDSSAPAPMSHTRTSDSQASSQTQRDDDEKTENTATSENE
VTKSEKSKESSEEEEE
NT seq
4371 nt
NT seq
+upstream
nt +downstream
nt
atggttggaatcatggcttcgtattcaagagaaaggcttgaaggtctcgcgagttccgcc
aaatcagccacggaattgcctccgaagctgcaacgcttgcgcaatctgcgccgggatttg
caaagagacgaacccgtttttcccaccgagctgcttcctcaccttttcgatcttctctcc
gatcaatttggcgctgttcgcaagtttgtcgccgagatacttggtgaaattggattgaaa
tatgtagaattattacctgaaatagtgcccattttaattaagtctctagaagacgagact
ccagctgtggccaggcaggtcatttcttgtggagctgacttattccgttccaccctcgaa
aaagtggcagttcagggtttgcattctagtgagttgaatgatcttcttgaatcttcgtgg
acatggatgattaaggttaaggatgaaatatgctcagtggctttcaagcaaggaaacagt
ggtgttaaattatgcgctatgaaatttgtggaaggacttattcttttgtatacacctcat
gaaggaagtgaagcagattttaatataactatccttcgtgggggacatcctgttttaaat
attggagacttgtcgattgaggccagccagaaattgggtttactgcttgatcagcttagg
cacccggcagctaaatctctaaatagctcaacgattgttgttctcattaatagtctttca
tcagttgcaaggaaacgtcctgcatattgtggacgtattctacctgttctacttagcttg
gatcccctaagctttctcaaaggagtgcatggcgctgcagcaaatcttgccttgaagact
gtatttctctcctacttgaaatgtacacatcccgctgctgcaccgtggaaggatcggttg
atcggtgctcttaaagaaatagaaggtggatgtcgggcaggcaaagctaaagatattttt
tacaagactaacggaagcattcaggacaaagacagtacagaggataccaaggtatctgtg
gacgataatcctctatgtgctagttctgatgttgcggaaagtaactttggtaggaaaaga
tctggatcagaatacaatattgatctaaatggagatgcgttgaatggaaaacgtgcaaga
ataacaccttctgtatcagaagaatcgaccgacggattaaatggtaatgatggtggctct
ctacctcgggttgctgctacctcaaccggaccaagtaatagcagaggagtgagtgatact
ggaccggttcagcaattagttgatatgttcggaaccttggttgctcagggtgaaaaagca
attggatctttggagattcttattaaaagtatttctgcggatttgcttactgatgttgtg
atggctaatatgcataacattccaccaaatggttcttcatatgctgatggaaccaatgag
ttggtgatgaatatgggtatagttggtagtgatgcgcaaattaaatatcccccatcattt
gtagctgctgtcctttcactgtcaactgcgttcccaccaattgctgctctgataaatcct
cgcataccgaaaactgaaaatgaagatgaagaagtctttgctgttcatgtggaccagcag
atgtttcctgctgaagatgcagttcttgaaactggcttattagcttcttctgatgcctct
tttccagaaaatgaagatgacagtaatgtgtttccaccaaacgtgcattatataaagaat
atagaaagtggaatccctggattggtctcttctgctcaacttgatgacagtaccatgaat
gtggagactgcaaccaagaatcaaaatgcgagtttcagtggaaatcttcttgtcgatgca
attccttcaatgtctgtggataagtctgaggaatttagtccaaaggcggctgccacagat
tccaccagcttggttttgtcaactgcaacttcagttgcttctgcgccccaatttgtcttg
cctaagatatcagcacctgttgtcgacctttctgatgaagagaaagacagtttgcagaag
ctggtgtttttgcgcattgttgaagcatataaacaaatatcaatgtctggtggttcacaa
ctccgtttttctcttcttgctcatctgggagttgagtttccttcagagttagacccttgg
aaaatattacaggagcatgttttgtcggattatttgaatcatgagggacatgagctgact
gtgcgggttctttacaggctatacggggaggcagaagcagaacaagatttcttctcgtca
actactgctgcgtctgcatatgaaagtttcttgctgactgtggctgaagcacttagggat
tcttttccaccgtctgacaaatctttaagtaaattgcttggagattctccacatctgccc
aaatcagttctgaagttgttggaatcgttttgctgtcctggaagtggtgaagaagttcaa
aaggatttacagaatggagaccgagttactcaaggtctcagtgctgtttggagccttatt
ttaatgagacctggaatccggagtgactgcctgaagattgcgttgcagagtgctgttcat
cacttggaagagattcgcatgaaagcaatccgcctggtggcaaacaagctctattctata
tcattcattacgcaacagattgaagaatttgcaaagaatagtctattttccgtcgtaagt
tgcatttcttcagagagaggagatgctgaaacacggattgatgattgtaataagaaggat
cttgatctgaaaagtccaccaaataaaccacagcccgttattagtggtatggatatgccc
tctgaagcaacatcatcagcttcactctctgaagctcaacgctgcctgtcactctatttt
gctctttgtacaaagaagcactccctttttgttcatgtgttcagcatttacaagaatgca
tcagatcctgttaagcaggctattcatcttcaaatcccaatactagttcgtactatgggc
tcatcctctgagcttcttaaaattataggagacccaccaagtgggagtgagaaccttcta
atgcaggttcttcaaaccctcactgaggggcccacgccttcttcagaattggtacttact
ataagaaagttgtttgatacaagaataaaggatgtagaaattcttttcccaattttgccg
ttcctgccaagagacgatgttctacgcatttttccacatatggtgaatcttcctatggag
aaattccaagttgcactttctcgtgtgctgcagggatcatctcagtctggcccagtgctt
tctccatctgaagttttaattgctatccatagcattgacccagcaagagatggaatacca
cttaaacaggtcacagatgcatgcaatacctgttttgcgcagaggcagacattcactcaa
caggttttagccagcgttctgaatcaactggtccagcaaattccattgccaatgttattc
atgcgtacagttttacaagctatcggtgcttttccagctctgtccgacttcatcctggag
atcctctctcgtcttgttagcaaacagatatggaaatatccgaaactgtgggttgggttt
ttgaaatgtgtacagacaacacagcctcaatcatacaaggtcttactacagcttccttca
cctcaactgggaaatgcattgactaaaatctcagcattaagagctccactaaccgcgcat
gccagccagccggagattcagtcttcacttccaaggtctacattggttgttcttggactt
gtccctgattctcaaggaacacaaacgagccatgtgcaagcgaatgagactcaaacgagt
cgggaacaacagcaacagcaagcaagtgagtcacagcaaacgagccagtctgagcaattt
tctttaccattaagtccctccaaaacagatcaccaggaacccagtcaggtagttgccagt
cagtctcagaatagtcccataggtacggggcgctctgaaataagccagtctcagaacagt
cccataggtacgggcgggtctgaaatgagtcagtctcagaacagtcctatagttacaggc
ctgtctgaaatgagtcagtctcagagcagtccggtaggtatgggccggtctgaaacgagt
cagtcacaaagcagtcctgttgggactggccagtctgaaatgggtcagagcgtacaagta
tcggactcgagtgctccagcaccaatgagccatactcgaacatcagactctcaagcgtca
agccagacacagcgtgatgatgatgagaagacagagaacacagcaacctctgagaacgag
gtgacaaaaagtgagaaatcaaaggaatcttctgaagaagaagaagagtga
DBGET
integrated database retrieval system
