KEGG   Capsella rubella (pink shepherd's-purse): 17882669
Entry
17882669          CDS       T02984                                 
Name
(RefSeq) katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1
  KO
K18643  katanin p80 WD40 repeat-containing subunit B1
Organism
crb  Capsella rubella (pink shepherd's-purse)
Brite
KEGG Orthology (KO) [BR:crb00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:crb04812]
    17882669
Cytoskeleton proteins [BR:crb04812]
 Eukaryotic cytoskeleton proteins
  Microtubules
   Tubulin-binding proteins
    Microtubule severing proteins
     17882669
SSDB
Motif
Pfam: WD40 Katanin_con80 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 EIF3I WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_SCAP Beta-prop_EML ANAPC4_WD40 Beta-prop_TEP1_C WD40_MABP1-WDR62_1st Beta-prop_DCAF4 Beta-prop_SPT8 Beta-prop_WDR75_1st NBCH_WD40 Beta-prop_EIPR1 Beta-prop_IFT140_1st Beta-prop_IFT122_1st WDR90_beta-prop_4th eIF2A Beta-prop_Vps41 Beta-prop_HPS5 Beta-prop_WDR19_1st Beta-prop_VPS8 Beta-prop_RIG_1st PROPPIN
Other DBs
NCBI-GeneID: 17882669
NCBI-ProteinID: XP_023636299
LinkDB
Position
Unknown
AA seq 837 aa
MTTKRAYKLQEFVAHSAAVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLYGHSS
GIDSVTFDASEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGS
LDTNLKIWDIRKKGCIHTYKGHTRGVNVLRFTPDGRWVVSGGEDNIVKVWDLTAGKLLTE
FKSHEGQIQSLDFHPHEFLLATGSADRTVKFWDLETFELIGSGGPETAGVRCLSFNPDGK
TVLCGLQESLKIFSWEPIRCHDGVDVGWSRLSDMNVHEGKLLGCSYNQSCVGVWVVDLSR
TEPCMAGDTAQSNGHPEKRSCSGRDPVILNDNNSKTILGKLSMSQNVDPLLKETKSLGRL
SVLQNSDPSTKETKSIGKASVSQNSDSSMKESKPLGRLSVSQNSDVSKEPRTLSSTGSLP
STPHRVSATNVSKATSGVSTAVSNAATSRRNFMKANPKANPVNKAADFAPVIVPRADPRI
EQATESRAELDIIARTMPYSLQAADSRRSPSSRNNPDPPNTSVLEMSESQPVEPNNILDG
GTLPGGKVGMRGATERSINDFRYKRYGRSNSRSHMGSPPRNHDENYDVVSHKSNRDPSPT
ESQKGGRFQSLVINRERRGRFSNFDGPVSNFSSGNVPVPNIRPSNMFKQRGNHMPVEQGP
DSPCEDNIIVDIMGKHDQFVSSMQSRLAKLQVVRRYWERNDVKNSVGSIEKMADNAVTAD
VLGIIAERNEILTLDNCTFLLPLLTALLGSDMDQHLSVSLDLLLKLVRLYGSPIYSSLSA
PASVGVDIEAERRIERYSRCFVELEKVKACLPSLSRRGGLVAKSVLELNLAFQEVSS
NT seq 2514 nt   +upstreamnt  +downstreamnt
atgaccaccaagcgagcctacaagcttcaggaatttgtggcacattctgctgctgtcaat
tgtcttaagatcggaaggaagtcttctagggttctggttacaggtggggaagatcacaag
gtcaatctttgggctattggtaagcccaatgccattctgagcttgtatgggcactcgagc
ggaattgattcagtgacgtttgatgcatccgaggtcttagttgcagcaggagctgctagt
ggtacaataaaactttgggatttagaggaggcaaagattgttaggactctcactggtcac
cgctcgaattgcatctcggtggattttcatccttttggtgagttttttgcgtctggctca
ctagacacaaatcttaagatatgggatataagaaaaaagggttgcatccatacttacaag
ggtcacactcgaggtgtcaatgtactcagattcaccccagatggtcgctgggttgtatct
ggaggagaggacaacattgtgaaggtgtgggatttaacagctggaaaactgttgaccgag
tttaagagccatgaagggcaaattcaaagcctagattttcatcctcatgaatttctactg
gcaacaggttcagctgataggactgttaaattctgggatctggaaacattcgagctaatt
ggttctggtggacctgagactgctggggtccgttgcctgagctttaacccagatggaaaa
actgttctttgtgggttgcaagaaagtctcaagattttctcgtgggagcctattagatgt
catgatggagtggatgttggatggtcaagattgtcagatatgaatgttcacgagggcaag
cttcttggttgctcgtacaatcaaagttgtgtaggcgtgtgggttgtagatctctcgcgt
actgagccatgtatggcaggagacactgcacaatcaaatggtcatccggagaaaagatct
tgctctggaagagatccagtaattctcaatgataataactcaaagactattctcgggaag
ctgtccatgtcccagaatgtagatcctttattgaaggaaacaaagtctctcggaagatta
tctgttttgcagaactctgatccttcgacaaaagaaacaaagtccattggaaaagcatca
gtatcccaaaattcagattcttcgatgaaggaatcaaagcctctcggaaggttgtcagtt
tctcaaaattcagatgtttcaaaagagccaaggacgttgtcatccacgggaagtttacca
agcactcctcatagggtcagtgcgaccaatgtgtcaaaagctacttcgggtgtttcaaca
gctgtctctaatgctgcaacatcaaggaggaattttatgaaagctaacccaaaggcaaat
cctgtcaataaggcagcggattttgctccggtaattgtcccaagagcagaccctagaata
gagcaggctactgaatccagagcagaacttgacataattgcaagaaccatgccttattcg
ttgcaggcagctgattctcgaaggtcacctagcagcagaaataaccctgatccgccaaac
acttcggttcttgaaatgtctgagtctcagccagttgaaccaaataatatactggatgga
ggtacacttcctggtggaaaggttggcatgcggggtgcaactgagcgaagcattaatgat
tttagatataagagatatggaaggagtaattcaaggtcacacatggggtcacctccacgg
aaccacgatgaaaactatgacgtggtaagccacaaatcaaatagagacccaagtcccact
gaaagtcagaaaggaggaagattccagtcactcgtcataaacagggagagaaggggacga
ttttcaaactttgacggtcctgtttcgaatttttcaagtggaaatgtgcctgttccaaac
atccgcccttcaaatatgttcaagcagagagggaaccatatgccagttgaacaagggccc
gattctccttgtgaagataatatcattgtagacataatggggaagcacgatcaatttgtc
agctctatgcagtctcgtttggctaagttacaggtagttcgtagatattgggaaaggaat
gatgtaaaaaactctgtaggttcgatagagaagatggctgataatgctgttacagcggat
gtactgggtataatagccgagagaaatgagattttgacgctagataattgtaccttcctt
cttccccttctaacagctcttctagggagcgacatggatcagcatttgagcgtttccctg
gatttgctgcttaagctggtcagactgtatgggtcaccaatttactcatcactgtcagct
ccagcatctgttggtgtagatattgaggctgaacgaaggattgagcgctacagtcgttgc
tttgtagagctagagaaagtcaaagcttgccttccctctctatcaagaagaggaggtttg
gtggcaaagtctgtgcttgaactcaacctagcatttcaggaagtatcatcgtaa

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