Capsella rubella (pink shepherd's-purse): 17882685
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Entry
17882685 CDS
T02984
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 56
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb03013
Nucleocytoplasmic transport
crb03015
mRNA surveillance pathway
crb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
17882685
09122 Translation
03013 Nucleocytoplasmic transport
17882685
03015 mRNA surveillance pathway
17882685
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crb03019
]
17882685
03041 Spliceosome [BR:
crb03041
]
17882685
Enzymes [BR:
crb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
17882685
Messenger RNA biogenesis [BR:
crb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
17882685
Spliceosome [BR:
crb03041
]
Complex C
Other components
EJC/TREX
17882685
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
17882685
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
17882685
NCBI-ProteinID:
XP_006289730
UniProt:
R0FFI8
LinkDB
All DBs
Position
Unknown
AA seq
427 aa
AA seq
DB search
MGDARDNEAYEEELLDYEEEDEKVPDSGNKVNGEAVKKGYVGIHSSGFRDFLLKPELLRA
IVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALIL
CHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTPGRVLAL
ARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVC
KKFMQDPMEIYVDDEAKLTLHGLVQHYIKLNEMEKNRKLNDLLDALDFNQVVIFVKSVSR
AAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIV
INYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSDVLNQVQERFEVDIKELPEQID
TSTYMPS
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgggagacgctagagacaacgaagcctacgaggaggagcttctggattacgaggaagaa
gacgagaaggtcccagattctggaaataaagttaacggcgaagccgtgaagaaaggttac
gttggaatacacagttctggattcagagacttcctcttaaaaccggagcttctccgagct
attgttgactctggatttgaacatccatctgaagttcaacatgaatgtatccctcaagct
atcttgggcatggatgttatttgccaagcaaaatctggtatgggaaagactgctgtgttt
gtgttgtctactctgcaacagattgaaccgtctcctggacaggtttctgcacttatcttg
tgccatacaagagagctggcttaccagatctgcaatgagtttgtgcgattcagtacctat
ctgcctgatacaaaggtgtcagtgttctatggtggagtcaacatcaaaattcataaagac
ttgctgaagaatgaatgtcctcacattgttgttggtacacctggtagggtgcttgcactc
gccagggacaaagatctctctttgaagaatgtgaggcattttattcttgacgagtgtgat
aaaatgctcgagtcacttgacatgcgaagggatgtgcaagagattttcaagatgactcct
catgataagcaagttatgatgttctcagctacactcagcaaagagatacgcccagtctgc
aagaagtttatgcaagatccaatggaaatatatgttgatgatgaagccaagttgactctt
catggacttgtccagcactacatcaaactgaacgagatggagaagaaccgcaagttgaat
gaccttcttgatgcgttggacttcaatcaagttgtcatatttgtgaagagcgtgagcaga
gctgcggagctgaacaagttgctggtagaatgcaatttcccctcaatatgcatccactct
ggcatgtcgcaagaagagaggttgactcgctacaaaagcttcaaggaaggacacaagagg
atccttgtggcaacagatttggtggggagaggcattgacattgagcgtgtcaatattgtt
atcaactatgacatgccagattctgctgatacatatcttcacagggttgggagagctggt
agatttggaacaaagggtctagcgatcacatttgttgcatcagcttcagattctgatgtt
cttaatcaggtacaagagaggtttgaggttgatatcaaggagctccctgaacagattgat
acctccacatacatgccttcttaa
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