Capsella rubella (pink shepherd's-purse): 17882721
Help
Entry
17882721 CDS
T02984
Name
(RefSeq) E3 ubiquitin-protein ligase UPL4
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
17882721
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
crb04121
]
17882721
Enzymes [BR:
crb01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
17882721
Ubiquitin system [BR:
crb04121
]
Ubiquitin ligases (E3)
HECT type E3
17882721
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HECT
ARM_ARMC5
Arm
Motif
Other DBs
NCBI-GeneID:
17882721
NCBI-ProteinID:
XP_023635896
LinkDB
All DBs
Position
Unknown
AA seq
1508 aa
AA seq
DB search
MENRGQKRMEVVEELPADKRACNSQDFRPSTSGSSVQAQDNGTSSGQDHVDADMDTSSSA
SPSSRSDEEQDKEDSDYGSCDSDEEDPRHRVLEEYQRGRSSGDQGKLKSLLSSLCGETDP
SGQLSGLTELCEVLSFCTEESLSSVMADTLSPVLVKLAKHENNADIMLLAIRAITYLCDV
YPPSVAFLVRHDTIPALCQRLLTIEYLDVAEQCLQALEKISRDQPEACLNAGAIMAVLSF
IDFFSTSIQRVAISTVVNICRKLPSESPSLFMDAVPILCNILQYEDRQLVENVAICLTKI
ADQVCESPALLDQLCRHGLIHQSTHLLNLNSRTTLSQPVYNGVIGLLRKLSSGSTLAFRT
LYELNIGYRLKEIMSTYDISHSVSTTHPINACSNQVHEVLKLVIELLPASPEDNQLALEK
ESFLVNQPDLLQRFGTDMLPVMIRVLNSGANVHVSYGCLSAIHKLTCLSKSGNLVELLKN
ANISSVLAGILSRKDHHVVVVALQLAEVLLEKYSDTFLNSFIKEGVFFAIEALLNSDRGQ
KNQVSGFIQGSADLSQKPATKETVKCLCQSFEKSPSSSSKTCKIENDSVYRLATRIKESF
FGPEVFNSEKGLTDVLQNLKDLSVALSALMTVPVDAHVLHDEKFFSIWNQIRERLNGRES
VSTFEFTESGIVKSLANYLSNGLYQRKLSKGDPECDHLPLVGKRYEVFTRLLWSDGEATS
SVLVQKLQNSLSSLENFPIVLSQFLKQRNSFAAIPNGRCTSYPCLRVRFLKAEEETSLRD
YSQDFVTVDPLCCLDAVNQYMWPKVNLEPIESVEAKDQAIECQSSQLQSTSISCQGESSS
PMEIDSVPSDAPQSQGSQVEDQTQLPGHGSGSEQENASSSSSEKEDALPRLLFRLEGLEL
DRSLTVYQAILLHKLKSDIETTNGSKMSGPHYITYERDAQLEDSSENLVSPRSMEDDEYR
PFLSYLFAHRLALRLKGSSPPAYDMLFLLKSLEGMNRFLFHLVSLGRINAFGEGRLENLD
DLMVLVRPVAHSEFVSSKLTEKLEQQLRDSFAVSTCGLPPWFNDLMDSCPFLFSFEVKSK
YFRLAAFGSQKVHHHPQHLSSSNVHGEGRPGTGSLPRKKFLAYREKVLESAAQMMELYGN
QKVIIEVEYNEEVGTGLGPTLEFYTLVSRAFQNPDLGMWRSDCSSFVGKPGEHSGVLLSP
SGLFPRPWSGTSTTSSDMLQKFVLLGTVVAKALQDGRVLDLPFSKAFYKLILGQELSSFD
IHFVDPALCKTLVELQALARRRKVFTETQGDSLAAKCDLSFHGTKIEDLCLEFVLPGYTD
YDLAPHSDNDMVNLDNLEEYIKAVVNATVCDGIQKQVEAFRSGFNQVFPIEHLRIFNEEE
LETMLCGEHDLFNMNEVLDHIKFDHGYTSSSPPVENLLEILHEFDKEQQRAFLQFVTGSP
RLPHGGLASLSPKLTIVRKHGSDSSETDLPSVMTCANYLKLPPYSSKEKMKEKLMYAITE
GQGSFHLS
NT seq
4527 nt
NT seq
+upstream
nt +downstream
nt
atggagaacagaggccagaaacgaatggaggttgtggaagagttacctgctgataagaga
gcttgtaactcacaggatttcaggcctagcacatctggatcatctgttcaggctcaagat
aacggtacgagttcaggacaggatcatgttgacgccgatatggatacttcttcatctgct
tcgccttcaagtcgatcagatgaagaacaagataaggaggattctgactatggatcttgc
gattctgatgaggaagatccaagacacagggtgcttgaggagtatcagagggggagatca
tctggtgatcaaggcaagttgaagtctcttctctccagcttgtgtggagaaaccgatcct
tcagggcagttatccgggcttacagagttatgcgaagtgttgtcattttgtactgaagaa
tctctctccagcgtaatggccgacacgctctcaccggtgcttgtaaagttagctaagcat
gagaacaatgcagatattatgctgctcgcgattagagcaattacttacttgtgtgatgtt
tatccgccgtcagtagcatttcttgtaagacatgatactattcctgctctctgccaaaga
ctattgactattgagtacttggacgttgctgagcagtgtttgcaagctcttgagaaaata
tcccgagatcagccagaagcctgcttgaatgctggagcaatcatggcagtgctttcgttt
atcgatttcttctcaacaagcatacagagggtcgcaatttctactgtggtcaatatatgt
aggaagcttccatctgagtctccctcacttttcatggatgctgttcctatattatgtaat
attcttcaatatgaagatcgacagttggtcgagaatgtggctatttgcttgacaaaaata
gcagatcaagtttgtgagtcacctgcactgttagatcaactgtgtaggcatggactcatt
catcaatcaacacatctcttaaacttgaatagccgcactaccttatctcagcctgtttac
aatggtgtgattggattgctaagaaaactttcttctggttcaactttagctttcagaacg
ttatatgagcttaacattggctacagattaaaagaaatcatgtctacgtatgacatttct
cactcagtgtctactacacaccctatcaatgcatgttccaatcaggtgcatgaagtcttg
aagttggtaattgagcttcttccagcttcacccgaggataatcagctggcattggaaaag
gaaagttttcttgtcaatcagcctgatcttttgcaacgatttggaactgacatgcttcct
gttatgattcgggtgctaaactctggagctaacgtacatgtttcttatggttgcctatca
gcaattcacaaactgacttgcttgagtaagtcaggtaatcttgttgagttgctgaagaac
gccaacatttcaagtgttttggctggtatcttgtcaaggaaggatcatcatgtggttgta
gtagcattgcagcttgcagaagtgcttcttgagaaatacagtgatactttcttgaattca
tttataaaggaaggtgtttttttcgcaattgaagcgctcttaaattctgatagagggcaa
aaaaatcaggtatctggtttcattcagggatcagcagacctttcacaaaagcctgctaca
aaagagactgtgaaatgcctgtgccaatcttttgaaaagtcgccatcctcgtcttcaaaa
acatgtaagattgaaaatgattctgtctaccgtcttgcaacacgtatcaaggagagtttc
tttggacctgaggtattcaactctgagaaaggtttgacagatgtccttcaaaacctcaaa
gacttatcagtagcacttagcgctttgatgactgtacctgttgatgcccatgtcctgcat
gatgagaaattcttctcaatatggaaccaaatcagggaaaggctgaatggaagggaatct
gtgtccacttttgaatttacagagagtggaattgtaaagtcattggctaattatctctct
aatggactctatcaaaggaaacttagcaaaggggatcctgaatgtgatcatttaccgctt
gttggtaagagatatgaggtgttcactagattactttggtctgatggtgaggcaacttca
tccgtgttagtacagaagctccaaaattccttatcttctttggaaaacttcccaattgtc
ctaagccaattcttgaagcaaaggaactcattcgcggctattccaaatgggcgttgcaca
agttatccatgcttaagagttcgttttctgaaagcagaggaggagacttctttgcgtgat
tactcccaagactttgtcactgttgacccactttgctgtttggatgctgtcaaccaatac
atgtggcctaaagtaaatttagaaccaatagaatctgtggaagcaaaagatcaagctata
gaatgtcaatcttctcaattgcagtctacttcgatatcttgtcaaggtgaaagctcaagt
cctatggagattgacagtgtaccttctgatgcgcctcagtctcagggatctcaagtggaa
gatcagacgcagcttccagggcatggtagtggttcagaacaagaaaatgcttcctcttcc
tcctctgaaaaggaggatgcactgcctagacttttgtttcgtctcgaagggcttgaacta
gaccgctcgttgactgtataccaggctattctcttgcacaaacttaaatcagatattgaa
actaccaacggttcgaagatgagtggtccccactacatcacttatgaaagggatgcacaa
cttgaggattctagtgagaatctggtttcacccagatctatggaagatgacgagtatcgc
ccgttcttatcctacttgtttgcccatagacttgctttgcgcctcaagggctcaagtcct
cctgcctatgacatgttgttcctgcttaagagtctggagggcatgaacaggtttcttttt
cacctggtttctcttggaaggattaatgcttttggcgaaggtaggctggagaatttggat
gatctgatggtactagttcgtcctgtggcacattctgaatttgttagcagtaagcttaca
gagaaattagagcagcagcttcgtgattcttttgctgtgtcaacctgcgggctgccacca
tggtttaatgatctaatggattcatgtccgtttctgtttagttttgaagtcaaatcaaaa
tacttccgacttgcagcctttggttcacagaaagtccatcaccatccacagcaccttagc
agttcaaatgttcatggtgaagggcgcccaggaactggcagtttaccacgtaaaaagttc
ttagcttaccgtgaaaaagttctggagtcagctgcacaaatgatggagttatatggcaac
cagaaggtgattattgaagttgaatacaatgaagaagtcggaactggtcttgggccaaca
ctggagttttatacacttgtcagtagggcatttcaaaaccccgatcttggtatgtggagg
agtgattgtagttccttcgttggaaagccaggcgaacattcaggtgttttgttgtctcct
tcaggactctttccacgcccttggtcaggtacatcaactacttcttcagatatgctgcag
aaattcgtcctcttggggacagtggtagcaaaggctctacaagatggacgagtcttagac
cttcctttttctaaagccttctataaactaatcctcggacaggagttgagttcatttgac
atccactttgttgaccctgcactttgtaaaacattggtggaattgcaagctctggcccgt
cggagaaaggttttcacagaaacacagggtgactccctagcagccaagtgtgatttaagt
ttccatggaacaaagattgaggacctttgtcttgaatttgtgttgcctggctacacggac
tatgatctcgctccccattctgataatgatatggttaatttggataacctcgaggaatat
atcaaggctgttgtcaatgccacagtatgtgacggaatccaaaaacaggttgaagcattt
cggtctggatttaaccaagttttccctattgaacatcttcggattttcaatgaagaggag
ctggaaactatgttgtgtggagaacatgatctctttaatatgaatgaagtcttggatcac
atcaagtttgatcatggatatacttctagcagcccaccagttgaaaatttattggagatt
ctgcatgagtttgacaaggagcaacaacgagcctttttgcaatttgtaacaggatctcct
cggctaccgcatggcggtttagcgtctctcagtcccaaactaacaattgtccgcaagcat
ggtagcgattcttcagagactgacctgcctagtgtgatgacatgcgccaattatctgaag
cttccaccttattcttccaaagagaagatgaaggagaaactgatgtatgccataactgaa
ggtcaaggttccttccatctctcttaa
DBGET
integrated database retrieval system
