Capsella rubella (pink shepherd's-purse): 17882754
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Entry
17882754 CDS
T02984
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
17882754
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
crb04131
]
17882754
Membrane trafficking [BR:
crb04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
17882754
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_Vps8
Beta-prop_VPS8
TPR_Vps41
Clathrin
Beta-prop_RIG_2nd
Beta-prop_WDR5
WD40_CDC20-Fz
WD40
Beta-prop_WDR3_1st
ANAPC4_WD40
WD40_WDHD1_1st
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML_2
TPR_VPS8_2
zf-RING_Vps41
WD40_Gbeta
Beta-prop_HPS5
Beta-prop_THOC3
WD40_Prp19
WDR55
Beta-prop_EML
zf_RING_Vps8
DUF7155
Motif
Other DBs
NCBI-GeneID:
17882754
NCBI-ProteinID:
XP_006289825
UniProt:
R0HFZ9
LinkDB
All DBs
Position
Unknown
AA seq
1938 aa
AA seq
DB search
MKQCNMELDLDSFLVSDSDSDSDLDSSAIPHRTVDEILNASSSSSPSSSPPSSPPLSNRL
KQNVPTCRLSETLAVVRPDSVESNLNRGFPPTRRNSASNSSSSSLRQLPLPSLFAGVRSN
VKPGAALAAAVAASRLVPTPHAAIIKSRRANSASSELLQQVSNQDDEDQEVSSSNGDSVG
VVAGSVSVDDFRSFGGESRMEDEDNGVAVVASQEKEAKVMEVQASDITESLVDARDNEAN
SKPDLVTASSGFDDEGIVSAGQEATTTTVSENAAVDEVKDGTMLVASLAESLESQHLNDS
DGKCYDTKVSNDENSSVGDVKSDKSDIIIPDSKEEGSDAVIPDDGSSISNISELVEERIV
ELEKERMSKREILKSQSFRKQLVLAEEFEKKQAYTGLHWEEGAAAQPMRLEGVKVGSTNL
GYFDVDADNTISRTISSPAFKRDHGSPQVLAVHLNFIAVGTSKGVIVVVPSKYSSDTADK
MESKMIWLGLQGERSQSPVTSVCFNQIGSLLLAGYGDGHVTVWDVQRASAAKVIIEHTAP
VVYAFFLGRDSQGSRQFKVITSDTKGVVFKHTFSWALLLNMYTVKTQCLLDGQKNGTVLS
ASPLPDENFGSSLASSKGGNSAVPSSSISSMMGGVVGVDSTWKLFNEDSTSVEEGVVIFA
TYQTGLVVKLIPNLEVYAQLPRPEGVREGSMPYTAWKCSTANSSKEAEDRVSFLVIAWDR
RVQVAKLVKSDLKEYAKWSLDSPAIGVVWLDDQLLVIPTVSGHLYLFTRDGVVIHQTNFS
VASSSGNDLISYHTYFTNVFGNPEKAYQNSVGVRGASVYILGTAHLVISRLLPWKERVDV
LRRGGDWMGAFNMAMSLFNGQAHGVVDLPKTVDAIREAIAPSLAELLLSYVDEVFSYISI
AFSNQTEKNGVTHERSSGTNNVNLEIEEQYNRVGGVAVEFCAHINRMDLLFDEIFSRFVA
VQQRDTFLELLEPYILRDMLGSLPPEIMQALVEHYSEKGWLQRIEQCVLHMDISSLDFNQ
VVRICREHGLYGALLYLFNKGLDDFRSPLEELLIVLRNSEKQRATVIGYRMLVYLKYCFL
GLAFPPGHGTLKPTRLPSLRTELIQFLLEKSNAHDSSTCVTSRWIYLNLYHLLEMDTEAT
LDVLRYAFVENEMMNQESHLLESGEVSLESKTEGSLPEDNNDILIQNLIDALVHVLDGGL
SLADKSGDPSDSNSVKYWPSKDDTSHLFEFVAFYAARGRVSIRNTILAQILDYLTSDHRL
PTYNVSSKMREIQLLNLLKAVPEIDWDAAYVSQLCEKAKFYQVCGYIHIIGRRYVAALDS
YMKEAEEPIHSFCYVNNMLSQLSGDEFTTFQSAIFSRIPELLELSRQGTFFLIINNLKDN
ITHIQEQLHSHPRSLFLYLKTVIEVHLSGSLDFSRLRKYEAVDNSGENIRRDIPKEVEIY
LEELNGFPKFIQDNPVNVTDDMIEQYVELLCKYEPKSVLRFLETFDSYRVEHCLRLCQEY
GIVDAAAFLLERVGDAASALSLTLSGLNEKYVELENAVDYLMSEMKLSASEGASLELFSS
ALELKEVHDIQGVLQACIGLCQRNTPRLNPEESEILWFRFLDTFCEPLMDSYRELSKTDE
TNKGPLGVKSLELNVNVSDVAIKWRIPRSDAAGTHVLRKLISQFIKEIVEGMIGYVRLPT
IMSKLLSDNGTQEFGDFKLTILGMLGTYGFEWRILDTAKSLIEDDTFYSMNLLKKGASHG
YAPRSLLCCICSCPLTKTFSALRVRVFNCGHATHLQCEPSENETSSSSSSLHVSSSGCPV
CMTKKTSKTSSKGKSFYLDYGLISTVSSNAGPSQRASPYSYENEMSDHSHNQQISRFEIL
TNLQKDQRLVQIESLPRLRLAPPAVYHEKVRRFSGFTPGESSGKDKKPVKAEQGKKLKAK
GSIFGSRFALGKDKTSRR
NT seq
5817 nt
NT seq
+upstream
nt +downstream
nt
atgaagcagtgtaacatggaactcgatctcgattcgttcctcgtatcggactcagactcc
gattccgatttggattcttcagccattcctcaccgtacagtcgacgagattctcaacgca
tccagttcttcatctccgtcatcttctcctccttcttcaccaccgttaagtaatcggctg
aagcaaaacgttccgacttgccgcctatcagaaacccttgcggtggtgagacctgactca
gttgaatctaatttaaatcgcggatttcctccgacgaggcgaaattcagcatcgaattct
tcttcttcttctttgaggcagttgcctttgccgtcgctattcgcaggagtgcggtcgaat
gtgaagcccggagcggcgcttgcggcggctgtggctgcttccaggttggttccgacccca
cacgctgctattatcaagtcaaggagagctaacagtgcaagtagtgagttgctgcagcag
gtttcaaatcaagatgatgaagatcaggaagtttcttcttcgaatggagattctgttgga
gttgttgctggatctgtttctgttgatgattttcgttcttttggtggagaatctcggatg
gaggatgaggataatggagttgcggttgttgcaagtcaagaaaaggaagctaaagtaatg
gaagtccaagctagtgatattactgagagcttagttgatgcccgtgacaatgaggcaaac
tcaaagcctgacttagtcactgcctcctctggttttgacgatgaaggaattgtatcagca
gggcaagaggcgacgaccacgacagtatccgaaaatgctgctgttgatgaggtcaaagat
ggcacaatgttagtcgcttctttggcagagtctttagagtctcagcatttgaatgattct
gatgggaagtgctatgatactaaggtaagcaatgatgagaactcaagtgttggagatgtt
aagagtgataaatcagatataattataccggattctaaagaagagggaagcgatgctgtt
attcctgatgatggaagctcaatttctaacatttctgagcttgtagaagagaggattgtt
gagttggaaaaagaaaggatgagtaaaagagagatattaaaatcacagtcttttagaaag
cagcttgtcttggctgaagagtttgagaagaaacaagcatatactggtttgcattgggag
gaaggggctgctgctcagccaatgagacttgagggtgttaaggtcggttcaacgaattta
ggttactttgatgttgatgccgacaataccataagccggaccatttcatcgccagcattt
aagcgagaccatggttctcctcaggttttggctgttcatttaaattttattgctgtgggt
acatccaagggggtcatcgtcgttgtaccaagtaaatattcttcagatactgcagataaa
atggaatcaaagatgatctggcttggtttacaaggagaaagatcccagtccccagttacc
tctgtttgcttcaatcagatagggagcctcctgctagcaggttatggtgatggacatgtt
acagtttgggatgtgcagagagcgtcagccgcaaaagtgattattgaacatactgcacca
gtagtatatgccttttttctaggtcgggattctcagggttctcgccaatttaaagttatt
acaagtgatacgaagggtgttgttttcaaacacactttttcttgggctctgctgttgaac
atgtacacagtaaaaacacagtgtcttcttgatggacaaaaaaatggaacggtcctctcc
gcatcacctttgcctgatgaaaattttggaagctccttggcctcttctaaagggggtaac
tctgcagttccatctagcagtataagtagcatgatgggaggtgttgttggggttgattcg
acttggaagctctttaatgaggattcaacttcggtggaagaaggtgttgttatatttgcc
acctatcaaactggactagtggtaaagctcattccaaatttggaggtgtatgcacaactt
cctaggcccgaaggggttcgggagggttccatgccatacactgcctggaaatgctcaacg
gcaaattcttccaaggaggcagaagacagggtttctttccttgtcattgcctgggatcgt
agagttcaggtcgccaagttggtaaaatcagaccttaaggaatatgccaaatggtcactt
gacagtccagctattggtgttgtttggcttgatgaccagttgctggtgatcccaaccgtg
tcgggccatttgtatctgttcacaagagatggtgtggtaattcaccagacaaacttttct
gtggctagttcttcagggaatgaccttatttcctatcatacgtactttacgaatgtcttt
ggaaatcctgagaaggcttatcaaaactctgtgggtgtcagaggggcctcagtatacatt
ctcgggactgcacatcttgttatctccagacttctgccatggaaggagcgggttgatgtg
ttaaggagaggaggtgactggatgggtgcatttaacatggcaatgtcactttttaatggt
caagctcatggggttgttgacctccccaaaactgtggatgccataagggaagccatagca
ccgagtttagcagagttgcttctttcctacgtagatgaagtgttttcttatatctcaata
gcattttccaatcagactgaaaaaaatggagtaacccatgagcgaagcagtggaaccaat
aatgtcaatttagagatagaagaacaatacaatcgtgtcggtggtgttgctgttgaattc
tgtgctcatattaacagaatggatttgctctttgatgagatattttccagatttgtggct
gtacaacaaagagatacatttttggagcttttggagccttatattttaagggatatgctt
ggatctcttcctcctgagattatgcaagcgctggtagaacattacagtgagaaaggatgg
ctacaaagaattgagcaatgtgtacttcatatggatatatcttccttagatttcaatcag
gtagtcagaatttgccgtgagcatgggctttatggggccttactctatcttttcaacaag
gggttggatgatttcaggtcacctctggaggaactcttgattgtcttacggaacagtgaa
aaacaaagggctacagtaatcgggtatcggatgcttgtttatctaaagtactgctttctt
ggtttggctttccccccaggacatggaactctaaaacctacacggttgccatcacttagg
accgagctgattcagtttctactggagaagtcaaacgcccatgattctagtacatgtgta
acatcgcgatggatttacttgaacctctaccatttactagagatggatactgaagccact
ttagatgtcctaagatatgcatttgtagaaaatgaaatgatgaatcaagagagtcatctg
ctggagtccggtgaagtaagtttagagtccaagactgaaggcagtttacccgaagataac
aatgatatactaatccagaatcttatagatgctctagttcacgttcttgatgggggctta
agcctggctgataaatctggcgatccaagtgattcaaattcggttaaatattggccttcc
aaggatgatactagtcatctatttgagtttgttgcgttttatgcagcacgtggtagagtt
agtatccgcaataccatattggcacagattttagattacttgacatcagatcacagactt
ccaacttataacgtgtcctctaagatgagagagatccaattactaaaccttctgaaagct
gtaccggagattgattgggatgcagcttatgtatcacagctttgtgagaaagcaaaattt
tatcaggtttgtggctatattcatatcatcggtcgaaggtatgttgcagctttggatagc
tacatgaaagaggcagaggaacccatacattcgttttgctatgtgaacaatatgctgtca
cagttgagtggcgatgaattcactacctttcagtctgcaatattttctagaattcccgag
ctccttgaattgagcagacagggaacattcttcctgattattaataatttgaaagacaac
attacacacattcaagagcagctccattctcatccaagaagcttattcctgtatctcaag
actgttattgaggttcacttgtctgggagtcttgatttttctcgtctaagaaaatatgaa
gctgtagataattctggtgaaaacattagaagggatatacccaaggaggttgagatttat
ttggaggaacttaatggctttcccaaatttatccaagataatccagtcaatgtgactgat
gacatgattgagcagtacgtggagctattatgcaagtacgaaccaaagtcagtcttgaga
tttctggaaacctttgacagctacagggtggaacactgtctacgtctgtgccaggaatat
ggaattgtagatgcagcagcattcctcttggagagggtgggtgatgcagcaagtgctttg
tcccttacactctctggactcaatgaaaagtatgtcgaacttgaaaatgcagtggattac
ctaatgtcagaaatgaaattgagtgctagcgaaggagccagcttggaactattcagtagt
gctctagaattaaaggaggtacatgacatacaaggtgttctgcaagcttgtataggattg
tgccagcgcaacactcctcgtcttaatccggaggagtcagagatactttggtttcgcttt
cttgacactttttgtgaacctttgatggattcatatcgggaactgagtaaaaccgatgaa
acaaataaaggtccgttaggtgttaaatcattggaactaaatgtcaatgtatcagacgtt
gcaattaagtggcggatcccaaggtctgatgcagcaggtacacacgtcttgaggaagctc
atatctcaatttatcaaagagattgttgaaggcatgataggatatgttcgtcttccaaca
atcatgtcgaaactcctctctgacaacggtactcaagagtttggcgattttaaacttaca
atattaggaatgcttggaacatatggcttcgaatggagaatactggatactgcaaagtct
ttaatcgaagatgatacattctactcaatgaacttactcaagaaaggtgcttctcacggg
tatgcacccagaagtttgctttgttgtatatgcagttgccctctcaccaagacattttct
gctcttcgtgtacgtgttttcaactgtgggcacgcaacacatcttcaatgtgaaccgtca
gagaatgagacgtcatcatcatcgtcatcacttcatgtctcctcatcaggctgtccggtc
tgtatgaccaagaagaccagcaaaacttcttctaaaggtaaatcgttctacctagattat
ggactgataagcacagtttcgtcaaacgccggaccttcacaacgtgcttcgccttactca
tacgagaatgaaatgagcgatcattctcataaccagcaaatatcacggttcgaaatctta
accaaccttcagaaagatcagagattggtacagatagagagcttacctcgattaaggctt
gcacctccagctgtgtaccacgaaaaagtgagaagattctctggttttacaccgggagag
agtagcggtaaagacaaaaaacctgtcaaagccgaacagggtaagaaactgaaagcaaaa
ggatcgatttttgggtcaagatttgctttaggaaaggacaaaacgagcagaagataa
DBGET
integrated database retrieval system
