Capsella rubella (pink shepherd's-purse): 17882841
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Entry
17882841 CDS
T02984
Name
(RefSeq) HBS1-like protein isoform X2
KO
K14416
elongation factor 1 alpha-like protein
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
17882841
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crb03019
]
17882841
Messenger RNA biogenesis [BR:
crb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
17882841
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
GTP_EFTU_D4
MMR_HSR1
PHD
Zn_ribbon_RanBP
C1_2
Motif
Other DBs
NCBI-GeneID:
17882841
NCBI-ProteinID:
XP_006287132
UniProt:
R0H5N2
LinkDB
All DBs
Position
Unknown
AA seq
741 aa
AA seq
DB search
MPRKGLSNFDDYDDGFDDDDDAYDYDYDIDIDEHEEEEEVVVSKEEISKQGLWRCAICTY
DNDESMFVCDICGVLRHPVAGNQSINKNTVESRCKEPVVSKLAKSLFGSVPSNSSKRAVL
SLLESKDLVMEQGPLPGISRGNIHDLQNAFSSKNSCISIAPFKFDAPSPDDLVSNGLTSS
KNGQKGSGDARMRQKEKQDSAEKNPLKKGGDSSETSSRGRHDKLDKSFSKGGAGGIKSGK
SLPKEKADMSNETSSSSKFMEESESLTSTMNKISLTGETEKSSDIKTIRPKSKSKHKPEE
WMLLDKEPDALSQLNLAIVGHVDSGKSTLSGRLLHLLGRISQKQMHKYEKEAKLQGKGSF
AYAWALDESAEERERGITMTVAVAYFNSKRHHVVLLDSPGHKDFVPNMIAGATQADAAIL
VIDASVGAFEAGFDNLKGQTREHARVLRGFGVEQVIVAVNKMDIVGYSKERFDLIKQHVG
SFLQSCRFKDSSLTWIPLSAMENQNLVAAPSDNRLSSWYHGPCLLDAVDSVKSPDRDVSK
PLLMPICDAVRSTSQGQVSACGKLEAGAIRPGSKIMVMPSGDQGTVRSLERDSQACTIAR
AGDNVAIALQGIDANQVMAGDVLCHPDFPVSVATHLELMVLVLEGATPILLGTQLEFHVH
HAKEAATVVKLVAMLDPKTGQPTKKSPRCLTAKQSAMLEVSLQNPICVETFTESRALGRV
FLRSSGRTVAMGKVTRIIQDS
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atgcctcgtaaaggattatccaatttcgatgattatgatgatggttttgatgatgatgac
gatgcttatgattatgactatgatattgatatagatgaacatgaagaagaagaagaagtt
gttgtatcaaaggaagaaatttctaagcaagggctttggcgatgtgcaatctgtacatat
gacaatgatgagagtatgtttgtttgtgatatctgtggtgttcttcgccatcctgtggcc
ggaaatcaaagtatcaataagaatacagttgaaagcagatgcaaagaacccgtggtatcc
aaattggcaaagtccctattcggatcagtcccttctaattcatcgaaaagggctgttctt
tctctgcttgaaagcaaggatcttgtgatggaacagggacctctgcctgggatttcccgt
gggaatattcatgatcttcaaaacgcttttagctctaaaaattcctgcattagtatagca
cctttcaagtttgatgctccatcgccagatgatttagtctccaatggactaacgtcctca
aaaaatggtcaaaaaggctcaggtgatgctagaatgaggcagaaggagaagcaagatagt
gcagaaaagaatcctttaaagaaaggaggagatagttcagaaacaagctcccgaggtaga
catgataaacttgataaaagtttttcaaagggcggtgcaggtggcataaaatcgggcaaa
agtttaccaaaagaaaaagcagatatgtctaacgagacaagttcttcctccaaatttatg
gaggagtcggagagtcttactagtactatgaataagatatcgttgactggggaaacagaa
aaatccagcgatattaaaaccataagaccaaaatcaaaatctaagcataagccagaggag
tggatgcttcttgacaaagaaccagatgcactaagtcaacttaatcttgccatcgtgggg
cacgttgattccggtaagtctacactttcaggtagattattgcatctattaggaagaata
tctcagaagcaaatgcacaaatatgagaaagaagcaaagttgcagggcaaagggtccttt
gcatatgcctgggcattggatgagagtgctgaagagagggaacgaggaataacgatgact
gtggctgttgcttatttcaattccaaaagacatcatgttgttttgctcgactctcctgga
cacaaagattttgttccaaacatgatcgcaggagcaacacaggcagatgctgcaattctt
gttatagatgcatctgtcggtgcttttgaagctggttttgataatttgaaaggccagaca
agggagcatgcacgggttctgagaggttttggcgtggagcaagtcatcgttgcagtcaac
aaaatggatattgttgggtattcaaaggaaagatttgatttaattaagcagcatgttgga
tcctttttgcaatcctgtcgttttaaggattcgtctctgacatggattccattaagtgcc
atggaaaaccagaacttggtggcagctccctctgacaaccgcctatcctcatggtatcat
ggtccatgtttattggatgccgttgactctgtcaagtctcctgatagagacgtctcaaag
cctctactcatgcctatatgcgatgctgtaagatcaacgtctcaagggcaggtatcagca
tgtggaaaacttgaagctggagctattcggccaggatccaagataatggttatgccatca
ggagatcaagggactgtgcggtctctggagcgtgactctcaggcttgcaccattgcaaga
gctggagataatgtagcgatagcattgcaagggattgatgcaaatcaagtaatggcagga
gatgtattgtgccatcctgattttcctgtatcagtagcaactcatttggagttgatggta
ctcgtcttggaaggggccactcctatcttgctcggtactcagctggagtttcatgtgcac
catgcaaaggaagcagcaacagttgtgaaacttgtggcaatgcttgatccgaaaacgggg
cagccaactaagaagtctcctcgttgtctaactgcgaaacagagtgcaatgcttgaggtt
agtctccaaaatccaatttgtgtggagacatttactgaaagtagagctcttggaagagtg
ttccttagatcatcgggaagaactgtcgctatggggaaagttactcggattattcaagac
tcataa
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