Capsella rubella (pink shepherd's-purse): 17883101
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Entry
17883101 CDS
T02984
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
17883101
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crb03019
]
17883101
03041 Spliceosome [BR:
crb03041
]
17883101
Messenger RNA biogenesis [BR:
crb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
17883101
Spliceosome [BR:
crb03041
]
Complex B
Other components
Prp19-related factors
17883101
Complex C
17883101
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
Mad3_BUB1_I
TPR_5
Motif
Other DBs
NCBI-GeneID:
17883101
NCBI-ProteinID:
XP_023635881
LinkDB
All DBs
Position
Unknown
AA seq
918 aa
AA seq
DB search
MAISKDLYPSQEDLLYEEEILRNPFSLKLWWRYLIAKAESPFKKRFVIYERALKALPGSY
KLWYAYLRERLDIVRNLPVTHPQYDSLNNTFERALVTMHKMPRIWVMYLQTLTVQRLVTR
TRRNFDRALCALPVTQHDRIWEPYLVFVSQDGIPIETSLRVYRRYLMYDPSHIEEFIEFL
VKSERWQESAERLASVLNDDKFYSIKGKTKHKLWMELCELLVHHANVISGLNVDAIIRGG
IRKFTDEVGMLWTSLADYYIRKNLLEKARDIYEEGMMKVVTVRDFSVIFDVYSRFEESTV
AKRMEMMSSSDEEDENEENGVEDDDEDVRLNFNLSVKELQRKILNGFWLNDDNDVDLRLA
RLEELMERRPALANSVLLRQNPHNVEQWHRRVKLFEGNAAKQILTYTEAVRTVDPMKAVG
KPHTLWVAFAKLYENHKDLVNTRVIFDKAVQVNYKTVDHLASVWCEWAEMELRHKNFKGA
LELMRRATAVPTVEVRRRVAADGNEPVQMKLHRALRLWSFYVDLEESLGTLESTRAVYEK
ILDLRIATPQIILNYAFLLEENKYFEDAFKVYERGVKIFKYPHVKDIWVTYLTKFVKRYG
KTKLERARELFEHAVSMAPSDVVRTLYLQYAKLEEDYGLAKRAMKVYEEATKKVPEVQKL
EMYEIYISRAAEIFGVPRTREIYEQAIESGLPHKDVKIMCIKFAELERSLGEIDRARALY
KYASQFADPRSDPEFWNKWHEFEVQHGNEDTYREMLRIKRSVSASYSQTHFILPENMMQK
DKMVDVDEAKDELKKAGLQEDEMAALERQLLTTTTTNTDAMKDGVRRLGFVSAGVISQSG
ENAGKPVTGNGEDIELPDESDDESDGEDQVEIAQKEVPAAVFGGLARKRDEDVEENGQDG
PAQKLGALERMKRQKLTQ
NT seq
2757 nt
NT seq
+upstream
nt +downstream
nt
atggcgatttccaaagatctctatccttctcaggaagatcttctttacgaagaagagata
ttgaggaatccgtttagtttgaagctatggtggaggtacctcattgcgaaagctgagtcg
ccgttcaagaaacgtttcgttatctacgagagagctttgaaagctcttcctgggagttat
aaattgtggtatgcttatcttagagaacggcttgatatcgttaggaatttaccagttact
catcctcagtatgattctctcaacaatacttttgagagagctttagttactatgcataag
atgcctaggatttgggttatgtatcttcagactcttacggttcagagattggttactcgg
actaggagaaattttgaccgtgcgctttgtgctttgccggttactcaacatgataggatt
tgggaaccgtatcttgtgtttgtgagtcaggatgggattcctattgagacttcacttagg
gtttataggaggtatcttatgtatgatcctagtcatattgaggagtttattgagtttctt
gtgaagtcagagcgttggcaagagtctgctgagagattggcttctgtgttgaatgatgat
aagttttattctattaaagggaagacgaagcataaactgtggatggagttgtgtgagctt
cttgttcaccatgccaatgttatttcgggtcttaatgttgatgctattatcagaggtggt
attaggaagtttacagatgaagtgggaatgctgtggacttctcttgcggattattatatc
aggaagaatttgctggagaaagctagggatatctatgaggagggtatgatgaaagtggtt
actgtgagagatttcagtgttatatttgatgtttactcacgatttgaggaaagtactgtt
gcgaaaaggatggagatgatgagttcaagtgatgaagaagatgagaatgaagagaatggt
gtagaggacgatgatgaggatgtccgtctcaattttaatctgtcggttaaagagctgcag
aggaagatactgaatgggttttggttgaatgatgataatgatgttgatctgagattggct
cgcttggaagaactgatggaaagaaggcctgcactggcaaacagtgtgctccttaggcaa
aatccgcacaatgttgaacagtggcatcgcagagtcaaattatttgagggaaacgcagca
aagcagattctcacatacacagaagcagtgaggactgtggatcctatgaaagctgttggg
aagcctcacacattgtgggttgcttttgccaagttgtatgaaaaccataaagacctggtc
aatacaagagtgatttttgacaaagcagtccaggtaaactacaaaaccgtagatcatcta
gccagtgtgtggtgtgagtgggctgagatggagctgagacacaagaatttcaaaggagca
ttagagctgatgaggcgtgctacagctgtaccgactgtagaagtcagacggagagtcgct
gctgatggcaatgaacctgtccagatgaagctacatagagcgttgcggctttggtccttt
tatgttgatttagaggaaagtctggggactttagaatcgacaagagcagtctatgagaaa
atattggatttgagaatagctacacctcagattatattgaattatgctttccttcttgag
gaaaataagtactttgaagatgcgttcaaggtgtatgaaagaggtgtcaagatattcaag
tatcctcatgtgaaagacatatgggtaacttatcttacaaagtttgtgaaaagatacggg
aagacaaagctggagcgggcaagagagctgtttgagcatgctgtttcaatggctccatct
gatgttgtcaggaccttataccttcagtatgctaagctagaagaggattatggtttggcc
aagcgagccatgaaggtttatgaggaagcaaccaaaaaagttccagaagttcagaagctt
gagatgtatgagatatacatttcccgtgcagcagagatatttggtgttcccagaacaagg
gagatatatgagcaagcaattgaatctgggcttccacacaaggatgtgaagatcatgtgc
ataaaatttgcagagctggagagaagcttgggagaaattgatcgtgctcgtgcactctac
aagtatgcctctcagtttgcagacccaaggtccgaccctgagttctggaacaagtggcat
gagttcgaagtccaacacggaaatgaggatacctacagagaaatgctccgtatcaagcga
agtgtttctgcaagctacagtcagactcatttcattctaccagagaacatgatgcaaaag
gacaagatggtagatgtggatgaggcaaaagatgagctgaagaaagcaggcttacaagaa
gacgagatggctgctctagagaggcagcttttgactacaacaactacgaacacagatgca
atgaaggatggtgtaagaagacttgggtttgtaagcgcaggagtcatctcacagtctggc
gagaatgcggggaaaccagtcacagggaacggagaagacatcgaacttcccgatgaaagt
gatgatgagtctgatggggaagaccaagtagagatcgctcagaaagaagtccctgctgct
gttttcggaggacttgcccgaaagagagacgaagacgtcgaagaaaatggtcaagacggt
ccagcccagaaactaggtgctctagagaggatgaagagacagaagcttactcagtga
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