Capsella rubella (pink shepherd's-purse): 17883252
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Entry
17883252 CDS
T02984
Name
(RefSeq) DNA mismatch repair protein MSH6
KO
K08737
DNA mismatch repair protein MSH6
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
17883252
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
crb03400
]
17883252
DNA repair and recombination proteins [BR:
crb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
17883252
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
PTM_DIR17_Tudor
LBR_tudor
Motif
Other DBs
NCBI-GeneID:
17883252
NCBI-ProteinID:
XP_006286904
UniProt:
R0FCI0
LinkDB
All DBs
Position
Unknown
AA seq
1325 aa
AA seq
DB search
MAPSRRQISGRSPLVNQQRQITSFFGKSASPSSSPSPSPASSLSSKKTPKSNKPNPNSPS
PSPPPPKKIPKLNSNPDPPARSPSPGPATPSPVQSKFKKSLLVIGQTPSPPLSAEIKYGD
EVVGRQVRVYWPLDKRWYDGSVTFYDKGVGKHVVEYEDGEEESLDLGKEKIEWMVVEKSG
DTVKRLRRGTSAFRKVVTDDDDDDVEMGNVEEDKENQSDGDDSSDEDWGKNVGKELCESE
EDDVELVDENEMDEEELLEEIDEGTPKVIRVSKPDCRKRKTSEVTKSGGEKKSRTDKDTI
LKGFEASVVEPPKKIEEADRVVKGLEDNILDGDALARFGARESEKFCFLGVDRRDAKRRR
PTDENYDPRTLYLPPDFVKKLTGGQRQWWEFKSKHMDKVVFFKMGKFYELFEMDAHVGAK
ELDIQYMKGEQPHCGFPEKNFSVNIEKLVRKGYRVLVVEQTETPDQLEKRRKEKGSKDKV
VKREVCAVVTKGTLTDGEMILTNPDASYLMALTEGGESLTDQKAEHNFGVCLVDVATKKI
MLGQFKDDQDCSALSCLLSEIRPVEIIKPARVLSSATERTIVRQTRNPLVNNLVPLSEFW
DAEKTIHEVGIFYKRINCQLSSSEGKILGDGSSFLPKMLTDLATEDKNGSGSLALSALGG
AIYYLRQAFLDESLLRFAKFESLPYCDFSNVNEKQHMVLDAAALENLEIFENSRNGGYSG
TLYAQLNQCVTASGKRLLKTWLARPLYNPEMIKERQDAVAILRGENLPYSLEFRKALSRL
PDMERLIARIFSSIEASGRNGDKVVLYEDTAKKQVQEFVSTLRGCETMAEACSSLRAILK
HDKSRRLLHLLTPGQSLPNISSFIKYFKDAFDWVEAHDSGRVIPHEGADEEYDCACKTVE
EFESSLKKHLKEQRKLLGDASINYVTVGKDEYLLEVPEILSGSVPHDYELCSSKKGVFRY
WTPTIKKLLKELSSAKSEKESALKNISQRLIGRFCEHQEKWRQLVSATAELDVLISLAFA
SDSYDSVRCRPVVVSGSTSDVPHLSATGLGHPVLRGDSLGRGSFVPNNVKIGGAEKASFI
LLTGPNMGGKSTLLRQVCLAVILAQIGADVPAETFEVSPVDRICVRMGAKDHIMAGQSTF
LTELSETAVMLTSATQNSLVVLDELGRGTATSDGQAIAESVLEHFIDKVQCRGLFSTHYH
RLSVDYQTNPKVSLCHMACQVGEGIGGVEEVTFLYRLTPGACPKSYGVNVARLAGLPEYV
LQRAVIKSQEFEALYGKKHGKTDSELAAMVKKIISSVASDSDNSTSKDSLCELHSMANTY
LQSTS
NT seq
3978 nt
NT seq
+upstream
nt +downstream
nt
atggctccgtctcgccgtcagatcagtggtagatctccgttggtgaaccagcagcgtcaa
attacctctttctttgggaaatctgcttcaccttcttcttctccgtctccatcaccagct
tcatctctttccagtaaaaaaacccccaaatctaacaagcctaaccctaattctccgtct
ccgtcaccacctccgcctaagaaaatccccaaattgaactctaatcccgatcctcctgct
cgtagtcctagccctggtcctgcgactccttctcctgtacagtccaagtttaagaagtct
ctgctcgtcatcggacagacaccttcgcctcctctgtcggcggaaattaaatacggggac
gaggtggtgggaaggcaagttagggtttactggccgttggataagagatggtatgatggg
agcgtgacgttttatgataagggtgtgggtaagcatgtggtcgagtatgaagatggggaa
gaagagtctttggatttagggaaggagaagattgagtggatggttgtggaaaaatcagga
gatacggttaagcgcttgagacgaggcacttcggctttcagaaaagttgtgaccgatgat
gatgatgatgatgttgagatgggtaatgtggaagaagacaaagaaaatcaaagtgacggt
gatgactctagcgatgaagactggggaaagaacgttgggaaggagttatgtgagagtgaa
gaagatgatgtggagttggtcgatgagaatgagatggatgaagaagagctgttggaagag
atagatgaaggaactcctaaggtaattagagtttccaaacctgactgtagaaagcggaag
actagtgaagtaacgaagtcaggcggtgagaagaaaagcaggactgataaagacactatt
ttgaaaggttttgaggcttctgttgtggagcctccgaagaagattgaagaagctgataga
gtagtcaagggtttggaagataacatattggatggggatgcactggctagatttggtgct
cgtgaatctgaaaaattctgcttcctgggagtagaccgaagggatgctaaaaggagacgc
cctaccgatgagaattatgatccgaggacactctaccttcctcctgattttgtgaaaaag
ttaacaggaggccagagacaatggtgggagtttaaatcaaagcatatggacaaagttgta
ttcttcaagatgggtaaattctatgagctttttgagatggatgcacatgtaggagctaag
gaactggatatccagtatatgaagggagaacaacctcattgtggatttccggagaagaat
ttctctgtaaacattgagaaattagttagaaagggatatcgggttttagtcgtggaacaa
acagaaacacctgatcagctggagaaacgccgaaaagagaaaggttccaaggataaagtt
gtaaagcgcgaagtatgtgcagttgttacaaaaggcactctgacagatggggagatgata
ttaactaatccggatgcatcttatctaatggcgttgactgaaggaggagaaagtttaacc
gatcagaaagcagagcacaattttggtgtctgtttggttgatgttgcgacaaagaagata
atgctggggcagttcaaggatgatcaagattgtagtgcattatcttgcctgctatctgag
ataaggccggtggaaattatcaaaccagctagggtgttgagttctgcaactgagagaaca
atagttagacaaaccagaaatcccttagtaaataatttggtcccactatctgaattctgg
gatgcagagaagaccatacatgaagttggaattttctataagcgaatcaattgtcaactg
tcttctagtgagggaaagattctaggcgatggttctagcttccttccaaaaatgctgact
gacttagcaacagaagataagaatggtagtggtagcctggcactctctgctcttggtggt
gccatttactacctgcgacaagcattcttggatgagagtctgcttagatttgccaagttt
gaatcactgccttactgtgatttcagcaacgttaatgagaaacagcacatggttcttgat
gctgctgctctcgaaaaccttgagatatttgaaaatagtagaaatggaggctattcggga
acgctgtatgctcaactgaatcaatgcgtcactgcatctgggaaacgcttactgaagaca
tggctggcaagacctttatataatccagaaatgatcaaggaacgacaagatgctgtagca
attctgcggggtgaaaatcttccgtactcactggaattccggaaggcgctgtccaggctt
ccagacatggaacggttgatcgcacgtatattttctagcattgaagctagtggaagaaat
ggagataaagtggtgttatatgaagatacggcaaagaagcaggtacaagaatttgtatca
actctacgcggttgtgaaacaatggcagaagcatgctcttctctccgtgctatcttgaag
catgataaatccaggcgtctgcttcatttattaactcctggtcaaagtcttcctaatata
tcatccttcattaagtatttcaaggatgcttttgactgggtagaagctcacgattctgga
cgtgtaataccccatgaaggagctgatgaagagtatgattgtgcctgcaaaacagtagaa
gaatttgagtccagtttgaaaaaacatctgaaagagcaacggaaattacttggagatgca
tcaataaattatgttacagtcggaaaggatgaatacctcttggaagttcctgaaatttta
agtgggagtgttcctcatgattatgaattatgctcatcgaaaaagggtgtttttagatat
tggactcctaccatcaagaaattattaaaagagctatcatcagcaaaatctgaaaaagag
tcggctctaaagaacatttcacagagattaattggacgtttctgcgaacatcaggaaaaa
tggagacaattggtttctgcaacagctgagctggatgtgttgatcagcctcgcttttgct
agtgattcttatgacagcgtaagatgccgcccagtagtagtatcaggatctacatctgat
gttccacacttgtccgccactggtttagggcatccagttctaaggggtgattcgttaggc
agaggttcttttgtaccaaataatgtaaagattggtggtgctgagaaagccagtttcatc
cttctcacaggccctaatatgggtggaaaatcaacccttctccgccaagtttgcttggct
gtaatcttggctcagattggagcagatgtcccagcagaaacctttgaggtttcgcctgtt
gatagaatttgtgtccggatgggtgcaaaagatcatatcatggcaggacaaagcacgttc
ttaacagaactttcagaaactgcggtgatgttgacatcagccacccaaaactcgctggtg
gtgctagatgagcttggacgaggaacagccacatcagatggacaagccattgcggaatcc
gtacttgagcacttcatagacaaggtgcagtgtagaggattattctctactcattatcat
cgtctctctgtggattaccaaacgaatccgaaggtctcactttgccatatggcatgtcaa
gtaggagaaggaattggtggagtagaagaagttacatttctctatagattgacacctggt
gcctgtcctaaaagctatggagttaacgttgctcggctagctggtcttccagaatacgtg
cttcagagagccgtgataaaatcccaagaatttgaggccttgtatggtaaaaaacatgga
aaaactgatagtgagttggcagctatggtaaagaagatcatcagtagtgttgcatcagat
tctgataactcaacttcaaaggactcattatgtgagctacactccatggccaacacatat
ctccagtcaaccagctag
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integrated database retrieval system
