Capsella rubella (pink shepherd's-purse): 17883277
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Entry
17883277 CDS
T02984
Name
(RefSeq) THO complex subunit 1 isoform X2
KO
K12878
THO complex subunit 1
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb03013
Nucleocytoplasmic transport
crb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
17883277
09122 Translation
03013 Nucleocytoplasmic transport
17883277
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crb03019
]
17883277
03041 Spliceosome [BR:
crb03041
]
17883277
Messenger RNA biogenesis [BR:
crb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
17883277
Spliceosome [BR:
crb03041
]
Complex C
Other components
EJC/TREX
17883277
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
17883277
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
efThoc1
CarD_C
CENP-X
PFD1115c_C
Sld3_N
Motif
Other DBs
NCBI-GeneID:
17883277
NCBI-ProteinID:
XP_006287317
UniProt:
R0H613
LinkDB
All DBs
Position
Unknown
AA seq
597 aa
AA seq
DB search
MDAFRDAILQRAPIESFALKTVQQFIQPQKQTKLAQDENQMLENMLRTLLQELVASAAQS
GEQIMQYGQLIDDDVDENIHGQIPHLLDVVLYLCENEHVEGGMIFQLLEDLTEMSTMKNC
KDVFGYIESKQDILGKQELFARGKLVMLRTCNQLLRRLSKANDVVFCGRILMFLAHFFPL
SERSAVNIKGVFNTSNETKYEKDPPNGISVDFNFYKTFWSLQEYFCNPASLTSASTKWQK
FSSSLAVVLNTFDAQPLSEEEGEANSLEEEAATFNIKYLTSSKLMGLELKDSSFRRHILL
QCLILFDYLRAPGKNDKDLPSETMEELKSCEDRVKKLLEITPPKGKEFLRAVEHILEREK
NWVWWKRDGCPPFEKQLIDKKSANAGQKKRRQRWRLGNKELSQLWRWADQNPNALTDSQR
VLTPAIADYWKPLAEDMDPSAGIEDEYHHKNNRVYCWKGLRFAARQDLEGFSRFTDFGVE
GVVPVELLPPEVRSKYQAKPNEKAKRAKKEETKGGSQETEGNQIGVSNSEAEAEGGRGEA
EAMESDAVADTPTPEEQQRLGGSDTDNGQEAGQIEDTETEEAGLMDADLDHPPMPVS
NT seq
1794 nt
NT seq
+upstream
nt +downstream
nt
atggatgcttttagagatgctatattgcagcgagctccaattgaaagctttgcacttaag
actgttcaacagtttatacaacctcagaaacaaacaaagttggcccaagatgaaaaccaa
atgcttgaaaacatgctccggacgttactgcaggagctagtggcttctgctgcgcaatca
ggagagcaaataatgcagtatggccagttgattgatgatgacgttgatgaaaatatacat
ggccagattcctcatcttttagatgttgtgctttatctttgtgagaacgagcatgtcgaa
ggtggcatgatattccagctgttggaggatttgactgaaatgtctactatgaaaaactgt
aaagatgttttcggttatattgaaagcaagcaagatatattgggcaagcaagagcttttt
gcacgcggaaaacttgtaatgttgaggacttgcaaccaacttctccggcgactctcaaag
gccaatgatgtggtattctgtggaagaatcctcatgtttttggctcacttttttccattg
tctgagcgctcagccgtgaacataaaaggagtttttaatacatccaatgaaaccaaatat
gaaaaagatcctccaaatggcatttctgtagatttcaacttctataagacattttggagt
ttacaggagtatttctgtaatccggcttctcttacttccgcgtctaccaagtggcagaaa
ttttcatctagtttggcggttgtattaaacacctttgacgcacaaccactaagcgaagaa
gagggagaggctaatagtttggaggaagaggcagcaacttttaatataaagtatctaaca
agtagtaaattaatggggttagagttaaaggattcaagtttccgacgacatattcttctc
cagtgcctcattctgtttgattatctgagggcaccagggaagaatgacaaagatctgcca
tctgaaactatggaagaactcaagtcatgtgaagatcgtgtaaagaaattgcttgagatc
actccgcctaaagggaaagaattcctccgtgcagttgagcatatattggagcgtgaaaag
aattgggtctggtggaaacgtgatggatgcccaccatttgaaaaacaactgattgataag
aaatcagctaatgcagggcagaagaaacggaggcaaagatggagattaggcaataaagaa
ctctctcaactttggagatgggcagatcaaaatccgaatgctttgactgattcacaacgt
gtcctgacccctgccattgcagactactggaaaccattagcagaagatatggatccatca
gctggcatagaagatgagtaccatcataaaaacaacagagtttactgctggaaaggtctt
cggtttgcagcacggcaagacttggaaggattttcgaggtttactgattttggagttgaa
ggagttgtccctgttgagctattgccacctgaggtgcgctcaaaatatcaagctaaacca
aacgaaaaagcgaaacgagcaaagaaagaagaaaccaaaggtggatctcaggaaacagag
ggaaaccagattggtgtttctaacagtgaagctgaagctgaaggaggaagaggggaagca
gaggcgatggaaagtgatgctgttgcagacactcctacgcctgaggaacaacaaagactc
ggtggttctgacacagataacggtcaagaggccggtcaaatcgaagacacagagacggaa
gaagctggcttgatggatgctgatcttgatcatcctcctatgccagtctcatga
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integrated database retrieval system
