KEGG   Capsella rubella (pink shepherd's-purse): 17883449
Entry
17883449          CDS       T02984                                 
Name
(RefSeq) sm-like protein LSM4
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
crb  Capsella rubella (pink shepherd's-purse)
Pathway
crb03018  RNA degradation
crb03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:crb00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    17883449
  09123 Folding, sorting and degradation
   03018 RNA degradation
    17883449
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:crb03019]
    17883449
   03041 Spliceosome [BR:crb03041]
    17883449
Messenger RNA biogenesis [BR:crb03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     17883449
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     17883449
Spliceosome [BR:crb03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    17883449
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 17883449
NCBI-ProteinID: XP_006288890
UniProt: R0HDF9
LinkDB
Position
Unknown
AA seq 129 aa
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEEKTRTDRKPPGVGRGRGRGMEDGGARGRGRGTSMGKMGG
NRGAGRGRG
NT seq 390 nt   +upstreamnt  +downstreamnt
atgcttcccctttcgcttctcaaaactgctcaagggcatcctatgcttgttgagcttaag
aatggagagacctacaatgggcatttggtgaattgtgatacgtggatgaacatccatctc
cgtgaagtcatctgtacttcaaaggacggagacaggttttggaggatgcccgaatgttat
atccgtggtaacacaatcaagtatcttcgagtacccgatgaggtgattgataaagtacag
gaggagaagacccgtacagatagaaaaccaccaggcgttggacgcggaagaggacgtggt
atggaagatggaggggccagaggccgaggcagaggaacttcaatgggaaagatgggtggc
aacaggggagcaggccgtgggcgtggttga

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