Capsella rubella (pink shepherd's-purse): 17883743
Help
Entry
17883743 CDS
T02984
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
17883743
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crb03019
]
17883743
03012 Translation factors [BR:
crb03012
]
17883743
Enzymes [BR:
crb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
17883743
Messenger RNA biogenesis [BR:
crb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
17883743
Translation factors [BR:
crb03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
17883743
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
dsrm
AAA_22
T2SSE
nSTAND3
ATPase
AAA_19
AAA_16
PhoH
Myosin_head
Motif
Other DBs
NCBI-GeneID:
17883743
NCBI-ProteinID:
XP_006286934
UniProt:
R0FCK9
LinkDB
All DBs
Position
Unknown
AA seq
1160 aa
AA seq
DB search
MRFTKRISLFLGQTTKIHSRSLLGYPSFHRIFTVVPVSNSPAFLISSRSGDGVTGSFYPI
HRRFIGHTAEQFSDDEYECEFEEHKASSSVANVDEWKWKLGILLANDSEQEVVSRDKRDR
RDYEQISNLAKRMGLYSEIYGKVVVASKVPLPNYRPDLDDKRPQREVVLPLSLQRRVEGL
LQEHLDRQQLLSGKANEGVADSQPSKQTEELPDETSDSFLDGSVMEKVLQRRSMRMRNMQ
RAWQESPEGRTMLEFRKSLPSFKDKERLLQAIARNQVIVVSGETGCGKTTQLPQYILESE
IESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLGETVGFKVRLEGMRGKNTHLLFCT
SGILLRRLLSDRNLNGVTHVFVDEIHERGMNEDFLIIVLKELLPRRPDLRLILMSATLNA
ELFSNYYGGAPTIHIPGFTHPVKAHFLEDVLEITGYKLTSFNQVDDYGQEKTWKTQKQLM
PRKRKNQITTLVEDALTKSNFENYNSRTRDSLSSWMPDCIGFNLIEAVLCHICRKERPGA
VLVFLTGWDDIRSLSDQIKAHPLLGDPNRVLLLMCHGSMATAEQRLIFERAPPNIRKIVL
ATNMAEASITINDVVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRLLPG
ECYHLYPKCVYDAFAEYQLPELLRTPLNSLCLQIKSLQVDSIAEFLSAALQAPESLAVQN
AIGFLKMIGALDEKENLTNLGKLLSILPVDPKLGKMLIMGAIFRCFDPILTIVSGLSVRD
PFLLPQDKKDLALSAKLRFSAKDYSDHMALVRAFEGWKDAEREGSAYEFCWRNFLSAQTL
QAIHSLRKQFNYILKEAGLVHDDSALNNKLSHNQSLVRAVICSGLFPGIASVVHRETSMS
FKTMDDGQVSLYANSVNSRFPTIPYPWLVFGEKVKVNAVLIRDSTGVPDSSLILFGGALS
SGVQVGHLKMLDGYIDFFMDPNLADSYVKLKEELDKLLQKKLENPNMDIHKEGKYLMLAV
QELVAGDQCEGRFVFGRDTKRPSQLQIGENKHSKDGTNPKSLLQTLLMRAGHSPPKYKTK
HLKTNEFRALVEFKGMQFVGKPQRNKTLAEKDAAVEALAWLTHTSDNSNGQHNEDADSPP
DVTDNMLKLLGGRRRRSKGK
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgcgtttcacaaaacgaataagcctcttcttggggcagacgaccaagattcatagccgt
tctctgttgggatatccgtctttccacagaatttttacagttgttccggtctctaattcg
ccggcgtttctgatttcgagccgcagtggtgatggtgtcacgggatcgttctacccaata
catcggcgtttcattggtcacactgcggaacagttctccgatgatgaatacgagtgtgaa
ttcgaggaacataaggcttcatcttctgtggccaatgttgatgagtggaagtggaagtta
ggcattctgttggccaatgatagcgaacaagaagttgtttccagagacaaaagggatcgt
agggattatgagcagatttcaaatcttgccaagagaatgggactgtacagtgaaatttac
ggaaaagtggtggttgcaagcaaggttcctcttcccaactaccggccagatttggatgat
aagcgaccacaacgagaggtggtacttcctttgagtttgcaaagaagggtagagggactt
ctccaggaacaccttgatagacagcagctactctcagggaaggctaatgaaggcgtagct
gattctcaaccttctaaacagactgaagaacttcccgatgaaacttctgattcgtttctc
gatggttctgttatggagaaggtacttcagagaaggagtatgcggatgcgcaatatgcag
agagcctggcaggaatcccctgagggaaggacgatgctggaattccgtaaatctttgcct
tcatttaaggacaaagaaagacttcttcaagctattgctcggaaccaggtaatagttgta
tctggggagactggatgtggtaagacaactcaactaccgcaatacattttggaatcagag
atagagtctggtcgaggagcattctgcaacatcatttgtacacaacctaggagaatatct
gccatggcagtttcagaaagagtgtcagctgagagaggagaacctcttggtgaaacggtt
gggtttaaagttcggctagaaggaatgagaggaaagaatacccatcttttattttgtaca
agtggtatcctacttagacgcctgcttagtgatcgcaatttgaatggtgtaacacatgta
tttgttgatgagatccatgaaaggggaatgaatgaagatttcttaattatagtgttaaag
gagcttcttccacggcgtccagatctgagattgattctcatgagtgccactctaaatgct
gaactcttttctaattattatggaggggcaccaaccattcacattcctggatttacacat
ccagtgaaggcacattttttggaggatgtactggaaataacgggatataagttgacctct
tttaaccaagttgatgactatggtcaagaaaagacatggaaaacgcaaaaacagttaatg
cctcgcaaaagaaaaaaccagatcactactcttgttgaggatgctctcaccaagtcaaat
tttgaaaactataactctaggacacgtgattcactttcgtcttggatgcctgactgcata
ggatttaatctcattgaggctgttctctgtcacatctgccgaaaagaacgtccaggtgct
gtattagtatttttgacaggatgggatgacatcagatccctaagcgaccaaatcaaagcc
catcctctcttgggggatcccaatagggtcttactattgatgtgccacggctcaatggca
actgctgaacagagactcatttttgaaagagcacctcctaatattcgaaaaattgttctt
gctacaaacatggcagaagctagtattactataaacgatgtagtttttgtggtcgactgt
ggaaaagcaaaagaaaccacctatgatgctttgaacaatacaccttgtttgctaccctcc
tggatatcccaagcttctgctcgacagagaagaggaagagctgggcgtctgcttccggga
gaatgctatcacttgtaccccaaatgcgtctatgacgcttttgcggagtatcaactacct
gaacttctgagaactcctttaaactctctctgcctgcaaatcaaaagtcttcaggttgat
agcattgcagaattcttgtcagctgcacttcaggctccagagtctttagctgttcaaaat
gctattggattcctgaaaatgattggagcactggatgagaaggaaaatctaacgaatctt
ggaaaactcttatcgattctccccgttgatcccaagctggggaaaatgctgataatgggt
gccatcttccgctgctttgacccgatcctgacaattgtatcagggctcagtgtcagagat
cctttccttctacctcaagacaaaaaggacttagctttatcagccaagttgagattctca
gccaaagactacagtgaccatatggcacttgttcgtgcgtttgaggggtggaaagatgct
gaaagagaaggatcggcttatgagttctgttggagaaatttcctgtcagctcagacgctt
caggcgatacattctctgaggaagcagttcaattatattctgaaagaagctggattagta
catgatgattcagctctgaacaacaaactaagtcataaccagtctctggttcgtgctgtc
atttgctctggcctattccccggaatagcatctgttgtgcatagagagacttccatgtca
tttaaaacaatggatgatggccaagtgtcactatacgcgaattctgtcaattcgcggttc
ccaaccattccatacccttggctagtctttggagagaaagtaaaggtcaatgctgtgctc
atacgggactccactggtgtccctgattccagtttgatcctttttggtggtgcactgagc
tctggagtacaggtgggacatcttaaaatgctagacgggtacattgatttcttcatggat
ccaaatttggctgattcctacgtaaagctaaaggaagagcttgataagcttcttcaaaaa
aagctcgaaaatccaaacatggacatccacaaagaaggcaagtacctcatgcttgcagtt
caagaacttgttgctggagaccaatgtgaagggagatttgtctttggtcgtgacacaaag
aggccaagccaactgcaaataggagaaaacaaacactccaaagacgggacaaacccaaag
agtctccttcagacacttttgatgagagctggacactcacctccaaagtacaagacaaaa
catctcaagacaaacgaatttagagcacttgtggagtttaaagggatgcagttcgttggt
aaacctcagaggaataaaacgctggcagagaaagatgcagctgttgaggccttagcttgg
ttgactcatacttctgataatagtaatggccagcacaatgaggatgcagattctccacct
gatgtaaccgataacatgcttaaactcctcggaggacggcgcaggcggtccaagggaaag
taa
DBGET
integrated database retrieval system
