Capsella rubella (pink shepherd's-purse): 17883937
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Entry
17883937 CDS
T02984
Name
(RefSeq) probable mediator of RNA polymerase II transcription subunit 37c
KO
K03283
heat shock 70kDa protein 1/6/8
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb03040
Spliceosome
crb04141
Protein processing in endoplasmic reticulum
crb04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
17883937
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
17883937
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
17883937
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
crb01009
]
17883937
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
crb03041
]
17883937
03009 Ribosome biogenesis [BR:
crb03009
]
17883937
03110 Chaperones and folding catalysts [BR:
crb03110
]
17883937
04131 Membrane trafficking [BR:
crb04131
]
17883937
03051 Proteasome [BR:
crb03051
]
17883937
03029 Mitochondrial biogenesis [BR:
crb03029
]
17883937
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
crb04147
]
17883937
Protein phosphatases and associated proteins [BR:
crb01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-5
PP5-interacting proteins
17883937
Spliceosome [BR:
crb03041
]
Complex B
Other components
Prp19 complex
17883937
Complex C
Prp19-CDC5 complex
17883937
Ribosome biogenesis [BR:
crb03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
17883937
Chaperones and folding catalysts [BR:
crb03110
]
Heat shock proteins
HSP70 / DNAK
17883937
Membrane trafficking [BR:
crb04131
]
Endocytosis
Clathrin-mediated endocytosis
Other core components
17883937
Autophagy
Chaperone mediated autophagy (CMA)
Chaperones
17883937
Proteasome [BR:
crb03051
]
Eukaryotic proteasome
Assembling factors
Other assembling factors
17883937
Mitochondrial biogenesis [BR:
crb03029
]
Mitochondrial protein import machinery
Endoplasmic reticulum membrane and cytosol
Other ER-memrane and cytosol factors
17883937
Exosome [BR:
crb04147
]
Exosomal proteins
Proteins found in most exosomes
17883937
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HSP70
MreB_Mbl
FGGY_C
Hydantoinase_A
DACNG
Motif
Other DBs
NCBI-GeneID:
17883937
NCBI-ProteinID:
XP_006290203
UniProt:
R0FM76
LinkDB
All DBs
Position
Unknown
AA seq
650 aa
AA seq
DB search
MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDSERLIGEAAKN
QVAANPANTVFDAKRLIGRRYNDATVQSDLRLWPFGLVSSGTADKPLIVVTYKGEEKRFA
AEEISSMVLIKMREISEAYLGTTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVLRIINE
PTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDF
DNRMVNHFVQEFKRKNKQDITGNARALRRMRTACERAKRTLSSTAQTTIEIDSLAGGFDF
YAPITRARFEELNMDLFRKCMEPVEKCLRDAKMDKNSVHEVVLVGGSTRIPKVQQLLQDF
FNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTTL
IQRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELSGIPPAPRGVPQ
ITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKSEDEEHK
KKVDAKNALENYAYNMRNTIRDEKIGEKLPAAEKKKIEDSIEEAIQWLDGNQLAEADEFE
DKMKELEGLCNPIIAKMYQGGAGGPGAAAMDEDEAPPASGGAGPKIEEVD
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atggctggtaaaggtgaaggtcctgcgatcggtatcgatcttggtaccacctactcttgt
gttggagtatggcaacacgaccgtgtcgagatcattgctaacgatcagggtaaccgtacc
actccatcgtacgttgctttcaccgactccgagaggctgatcggtgaggctgctaagaac
caggtcgccgcgaacccagccaacactgtctttgatgcaaagaggttgattggtcgtaga
tacaatgacgcaactgtccaaagcgacttgaggttatggcctttcggtctcgtctcttct
ggaactgctgacaagccattgattgtagtcacctacaagggagaagagaaacgattcgcc
gctgaggaaatctcttccatggttctcattaagatgcgtgagattagtgaagcttacctt
ggcaccactatcaagaacgctgtggtcactgtccctgcttacttcaatgactctcagcgt
caagctacaaaggatgctggtgtcatcgctggtttgaatgttctgcgtatcatcaacgag
ccgaccgctgctgctattgcctacggtctcgacaagaaggcaaccagcgttggagagaag
aacgtgttgatctttgatcttggtggtggtacttttgatgtttctcttcttactattgaa
gaaggtatcttcgaggtcaaggctactgctggagatactcatcttggtggtgaggatttc
gataacaggatggttaaccactttgttcaagagtttaagaggaagaacaagcaggacatc
accggtaacgctagagctctaaggaggatgagaacagcttgcgagagagcaaagagaact
ctttcttccaccgcacaaacgaccatcgagattgactctctggcaggaggatttgacttc
tatgctccaattacccgtgctagattcgaagagcttaacatggatcttttcaggaagtgt
atggagcctgttgagaagtgtctccgtgatgctaagatggacaagaactcggtacatgag
gttgtccttgtcggtggttctacccgtatccccaaagttcaacagcttctccaagatttc
ttcaatggcaaggagctctgcaagtctatcaaccctgatgaggctgttgcatacggtgca
gctgttcaggctgcaattctaagcggtgaaggaaacgaaaaggttcaagaccttctcttg
cttgatgtcacccctctctccctcggtcttgagactgctggtggtgtcatgaccactttg
attcagagaaacacaacaatccccaccaagaaggagcaggtcttctccacttactcggac
aaccagcctggcgtgttgatccaagtctacgaaggtgaaagagccagaaccaaggacaac
aaccttctcggtaagtttgagctctccggaatccctccagctcctcgtggtgtccctcag
atcacagtctgctttgacattgatgccaacggtatcctcaacgtttctgctgaggacaag
accaccggacagaagaacaagatcaccatcaccaatgacaagggtcgtctctccaaggac
gagattgagaagatggtgcaagaggcagagaagtacaagtcggaggatgaggagcacaag
aagaaggtcgatgccaagaacgctcttgagaactacgcttacaacatgaggaacaccatc
cgtgacgagaagatcggtgagaagcttccggctgcagagaagaagaagattgaggactcg
attgaggaggcaatccaatggcttgatggtaaccagttggctgaagctgacgagtttgaa
gacaagatgaaggagttggagggtctttgtaacccgatcatcgctaagatgtatcaagga
ggagctggtggtcctggagctgctgcaatggacgaagatgaagctcctcctgcctcaggt
ggtgctggccccaagatcgaggaagtcgactaa
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