Capsella rubella (pink shepherd's-purse): 17884009
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Entry
17884009 CDS
T02984
Name
(RefSeq) protein PIR
KO
K05749
cytoplasmic FMR1 interacting protein
Organism
crb
Capsella rubella (pink shepherd's-purse)
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crb03019
]
17884009
Messenger RNA biogenesis [BR:
crb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
17884009
Factors involved in mRNA localization
Other mRNA localization factors
17884009
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FragX_IP
CYRIA-B_Rac1-bd
WASH-4_N
Motif
Other DBs
NCBI-GeneID:
17884009
NCBI-ProteinID:
XP_006286909
UniProt:
R0FCI4
LinkDB
All DBs
Position
Unknown
AA seq
1282 aa
AA seq
DB search
MAVPVEEAIAALSTFSLEDEQPEVQGPAVMVSAERAATDSPIEYSDVAAYRLSLSEDTKA
LNQLNTLVQEGKEMASILYTYRSCVKALPQLPESMKHSQADLYLETYQVLDLEMSRLREI
QRWQSSASAKLAADMQRFSRPERRINGPTVTHLWSMLKLLDVLVQLDHLKNAKASIPNDF
SWYKRTFTQVSAQWQDTDTMREELDDLQIFLSTRWAILLNLHVEMFRVNNVEDILQVLIV
FIVESLELDFALLFPERYILLRVLPVLVVLATPSEKDTEALYKRVKLNRLINIFKNDPVI
PAFPDLHLSPAAILKELSVYFQKFSSQTRLLTLPAPHELPPREALEYQRHYLIVNHIGAL
RAEHDDFTIRFASSMNQLLLLKSNDGAYTEWCREVKGNMYDMVVEGFQLLSRWTARIWEQ
CAWKFSRPCRDAGETPEASGSYSDYEKVVRFNYTAEERKALVELVGYIKSVGSMLQRCDT
LVADALWETIHAEVQDFVQNTLATMLRTTFRKKKDLSRILSDMRTLSADWMANTRPEHEM
PSSQHGSDESRGNFFYPRPVAPTAAQVHCLQFLIYEVVSGGNLRRPGGFFGNNGSEIPVN
DLKQLETFFYKLSFFLHILDYSASIGILTDLGFLWFREFYLESSRVIQFPIECSLPWMLI
DYILEAQNSGLLESVLLPFDIYNDSAQQALVVLRQRFLYDEIEAEVDHGFDIFVSRLSES
IFTYYKSWSASELLDPSFLFALDNGEKFSIQPVRFTALFKMTKVKILGRTINLRSLIAQR
MNKIFRENLEFLFDRFESQDLCAVVELEKLIDILKHSHELLSEDLSIDPFSLMLNEMQEN
ISLVSFSSRLATQIWSEMQSDFLPNFILCNTTQRFVRSSKVPPTQKPSVPSAKPSFYCGT
QDLNAAHQSFARLHSGFFGIPHLFSIVKLLGSRSLPWLIRALLDHISNKITTLEPMISGL
QEALPKSIGLLSFDGGVTGCMKLIREQLNWGSKSELKSEVLRGIKEIGSVIYTMGLLDIV
LREVDTKRFMQTAPWLGLIPGAEGQIVNAQDGESPLVNLLKSATSAVVSSPGCLNPAAFY
TMSKQAEAADLLYKANMNGGSVLEYTLAFTSASLDKYCSKWSAPPKTGFIDITTSKDFYR
IYGGLQIGYLEEVAAPQSAQHEVLGDSIAWGGCTIIYLLGQQLHFELFDFSYQVLNVSEV
ETVSASHTHKNPQNHQGWEGLLEGMKKARRLNNHVFSMLKARCPLEDKTACAIKQSGAPL
PRVRFENTVSAFETLPQKGTVG
NT seq
3849 nt
NT seq
+upstream
nt +downstream
nt
atggcggttcctgtagaggaagcaatcgcagctctttccacattctccttggaggatgag
caaccagaagtccaaggaccggctgtgatggtttcagctgaaagagcagcaacagatagt
cccattgagtatagtgatgttgcagcataccggttgtctctctcagaagacacgaaagct
cttaaccagctgaatacacttgtacaagaaggaaaagagatggcgtcaattctatacaca
tatagaagctgtgttaaagcattgcctcagcttcctgaatcgatgaagcatagtcaagcg
gatttgtatctagaaacgtatcaagttttggacttagaaatgagtcgtttacgcgaaatc
cagagatggcaatcgtcggcttcagctaaattagctgctgacatgcagcgtttttcaaga
cctgaacggcgcatcaatggccccacagtcacacatctttggtcgatgctaaagttgctt
gacgtcttggttcagctagatcatcttaaaaatgctaaagctagcattcctaatgatttc
tcttggtataagagaacattcactcaagtcagtgcgcaatggcaagatacagatactatg
agagaagagttagatgacttacagattttcctgagcacaagatgggctattttactcaac
ctgcatgttgagatgttccgtgtaaacaatgtggaagatattctccaagttctcatagtc
tttatcgtggagtctctggagttggattttgcactactttttccagagcgctatattctt
ctacgagttttacctgttcttgtcgtcttagcaacaccatctgagaaagataccgaggct
ttatacaagagggtaaaactcaacagattaataaacattttcaagaatgatcctgtcatt
cctgcatttccagatctccatctttctcctgctgcaattttgaaagaattgtcggtatac
tttcaaaagttttcatcacagactcgccttctgacccttccagcacctcatgagctccct
ccacgtgaagcactagagtatcagagacactatttgatagtcaatcacattggagctctc
cgtgctgagcacgacgatttcacaatccgatttgcttcatccatgaatcagttattgctg
ttgaagtcaaacgatggagcatataccgaatggtgcagagaggtcaaaggaaatatgtac
gatatggttgttgaaggtttccaactgttaagtagatggacagcacgcatttgggagcaa
tgtgcatggaaattctctcgcccatgtagggatgcaggagagactccggaagcctcagga
tcatattctgattacgagaaggtggtgaggttcaattatactgcagaagaaaggaaagcc
ttggtagaacttgttggctatataaagagcgtaggatcgatgctgcaacgctgtgacaca
ttagttgctgatgctttatgggagacaatacatgccgaagttcaagattttgttcagaac
acgttagccacaatgttacgtaccaccttccgaaagaagaaagatctctcaaggattctt
tctgatatgcggacactttcagctgactggatggcaaataccaggcccgaacatgagatg
ccatcttcacaacatggaagtgatgaaagcagagggaatttcttttatccgaggccagtt
gccccaacagcagcacaggtgcattgcttgcagtttttgatatatgaggtcgtctctggt
ggaaatctgagaagacctgggggattctttggaaataatggctctgagattcctgttaat
gacttaaagcaattagaaacttttttttacaagctcagctttttcttgcacatattggat
tactcagcaagtattggaatattgactgacctggggttcctgtggtttagagaattttac
ctggagtcttcacgtgttattcagttcccgattgagtgttcactaccatggatgctgata
gactacattctggaagcccagaattcaggccttcttgagagtgttctgctgccttttgac
atttataatgactcagctcaacaagctttggttgtcctgaggcagagattcctctacgat
gaaattgaagctgaggtggaccatggttttgatatatttgtttcaaggctctcggagtct
atattcacatattacaagagttggtcagcaagtgagcttcttgatccatcatttctcttt
gccttggacaatggtgaaaagttctccatccaacctgtgaggtttactgcgttatttaag
atgacaaaagtaaagatactaggtagaacaattaatttaagaagtttgatcgctcagagg
atgaataaaatctttagagagaatctggagtttctttttgaccgttttgagtcccaggac
ctatgtgctgtagtggaattggagaagctgatagatatcctaaagcactcgcatgaattg
ctttcagaagatctttccatagatcctttcagcctcatgttaaatgaaatgcaagaaaac
atttctctggtctcattttcaagtcgacttgctacacagatttggtctgagatgcagagt
gatttcctaccaaacttcattctttgcaataccacacagcgatttgtccgttcatcaaaa
gttcctcctactcagaaaccatcagtgccttctgctaagcctagtttctattgtggcact
caagacttaaatgcagctcatcaaagttttgcacgattgcatagtggtttttttgggata
ccacatttgttttccatagttaaacttcttggatccagatcattgccgtggcttataaga
gctttgcttgaccacatatcaaataagataacgacacttgagccaatgatctctggattg
caagaagcattgcccaagtctattggattgctttcttttgatggtggtgttacaggttgt
atgaagcttatacgagaacaactaaattggggcagtaagtcagagctcaaatcagaagtt
ctacgaggaataaaggagattggaagtgtgatatatacaatgggacttctagatatcgta
ttgagagaggtagacacaaagcgtttcatgcaaacagctccatggttgggattgatcccg
ggtgctgaaggacagatagttaatgctcaagacggtgaaagccctcttgtcaatctctta
aagtcagcaacttctgcagttgtctcaagtcccggctgtcttaatccagcagcgttttac
actatgtccaaacaggcagaagctgcagatcttttgtataaggcaaacatgaacggtgga
agcgttcttgaatacacacttgcattcacaagtgcgtcgctcgacaaatattgtagtaaa
tggagtgctcctccaaagacaggcttcattgacattacaacttcaaaggatttttaccgt
atatacggtggtctacagattggatatctggaggaggtagcagctccacaatcagctcaa
catgaagtcctaggtgattcgatagcttggggtggttgcaccattatttacttgctcggc
cagcaacttcactttgagttgtttgatttctcgtaccaagtactcaatgtctctgaggtt
gaaactgtctctgcttcacatactcataagaatcctcaaaaccatcagggatgggaaggt
ttgttggaagggatgaagaaagctcggaggctgaacaaccatgtcttctccatgcttaaa
gctcgttgtcccctagaagacaaaacggcttgtgcgatcaaacagagcggcgcaccgctg
ccacgtgtcaggtttgagaatactgtatctgctttcgagactctacctcagaaaggcacc
gttggctga
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