Capsella rubella (pink shepherd's-purse): 17884038
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Entry
17884038 CDS
T02984
Name
(RefSeq) protein SMG7 isoform X1
KO
K14409
protein SMG7
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
17884038
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crb03019
]
17884038
Messenger RNA biogenesis [BR:
crb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
17884038
mRNA cycle factors
Common to processing body (P body) and stress granule
17884038
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Motif
Other DBs
NCBI-GeneID:
17884038
NCBI-ProteinID:
XP_023635832
LinkDB
All DBs
Position
Unknown
AA seq
1031 aa
AA seq
DB search
MMTLQMDKTTASSPRERAKAIFDKTVELENKRWKDAQARKQADPNLWQQIRENYEAILLE
DHTFSEQHSIELTLWQLHYKFIEEFRARIHAALSSGSSSAAQNVKGPSRPDRIAALKLQF
RTFITEATGFYHGMILKIRSKYGLPFGYFSEDQESQNLTDNDGKKSAEVKKGLVSCHRCL
IYLGDLARYKGLYGEGDSKIREYTAAKSYYLQAASLLPASGNPHHQLAIIASYSGDEFAA
TYRYFRSLAVESPFPTARDNLIVAFEKNRQSYAQLCVASKDSSKRQTGKGRGKGKDISSK
DANLVAGPEKDKVTSGNEMLKAFCIRFVRLNGILFTRTSLETFLDVLASTSSSLREVISS
STVEGLSLGLDTSNSALFIVRLVAILIFSVHNSKKETEGQSYAEIVQRVEPARNSLTASF
QLLGHIIEQCVQLRDPSTSYFLPGILVFVEWLACCPDIALASDPDDRQTTVRNSFWNQCV
TFFNQILLLLGPMFLDDVEDETCFSNMSLYDEGETENRLALWEDFELRGFLPLLPAQTIL
DFSRKHSFVTEGPKEKKARVKRILAAGKALTSVIKVDDNDVYYDSKKKKFLVGVKPSDDL
LDSHSSPPKADALQDNQVMVNHNSPFIQQDQQIYMGEEDDDDEVIVFKPLVTEKRKTASD
QICVSSGGFRKPDQVATTGNLKPLSGSDSAFRENQLLQARGNASIQVPASVDSNLLGLLQ
ASTQSQAMHLQQVQTQAVNPQAAQSLAAARLQLMQSQVAHLQPLSSRVVHFQQTQAPVSH
VSPVQSQSASLVGGTKWLPEEAASLANTLSSFAQMGNGHVMKNEMHGNHGVSYHPAHSEP
AQQSYNVNGMGGMPYSQSLTPEAVFPPKSDAVSSSGAIADGLGVQSSLARKNPISRAFRH
LGPPPGFNSVPSKLQKEPAPGSDLSGNNLAVDDYSWLDGYQAQSSRGAAALNSSLNYASS
GKPEHMGTSNGMNGATNFPFPGKQVPTSQVQADFPYFQNPLKESFANQNHQSAQLPEQYQ
GQSTWSSRHFV
NT seq
3096 nt
NT seq
+upstream
nt +downstream
nt
atgatgactttgcagatggataaaactactgcttcctccccaagggagcgagccaaggcc
atatttgataagactgttgagttagaaaacaagcgttggaaggatgctcaggctagaaaa
caggctgacccaaatttgtggcagcaaattcgtgagaattacgaagcaatacttcttgaa
gatcataccttttctgagcagcacagcattgaacttacactgtggcaacttcattacaaa
ttcattgaggagttcagagcacgcatccatgctgcattgagttctggtagctcgagtgcg
gcacaaaatgtaaagggtccttctagacccgaccgcattgcagccctcaagctgcagttc
agaacattcattacagaagcaactggattttaccatggtatgatcttaaaaattcgatca
aagtatggtcttccctttggttacttttctgaggatcaagagagtcaaaacttgactgat
aacgatggaaagaagtcggcagaagttaaaaaaggcttggtatcttgtcatcgttgctta
atataccttggtgatctggctcggtataaaggattgtatggggagggggattccaagatc
agagagtatactgctgctaaaagttactatttgcaagcagcttctctattgcctgccagt
ggaaacccacatcatcagcttgctataattgcttcttactcgggggatgagtttgcagca
acatatcgttacttccggagtttggctgtagagagcccttttccaactgcccgtgataac
ttgattgttgcttttgaaaagaatcgtcagagttatgcccaattgtgtgtggcttccaaa
gactcatctaagaggcagactggtaaaggacgagggaaaggtaaagatatttcatcgaaa
gatgcaaacttggtagctggtcctgagaaggataaagtaactagtggaaatgagatgctt
aaagcattctgcattagatttgttcgtctcaacgggattctatttacccgaacaagcctg
gagacgttcttagatgttcttgcctccactagcagcagtttacgagaggtaatttcttct
agcacagtggaagggctgagtttgggcttagacaccagtaacagcgcacttttcatagtt
agactcgtggcaattctgatattcagcgttcataactcaaagaaagagacagaaggtcag
tcatatgcagaaattgtacagcgagtggagcctgccagaaactctttaacagctagtttt
cagttgcttggacacataatagagcagtgtgtgcaattgcgtgatccttcgacgagttac
ttcctgcctggtatcttggtttttgttgaatggttggcgtgttgtcctgatattgcacta
gcaagtgatccggatgacagacagactactgtgagaaatagcttttggaaccagtgtgtt
accttcttcaatcagatcttgttgttgcttgggcctatgtttttggatgatgttgaagac
gagacttgcttctcaaacatgagcttgtatgatgaaggagaaactgaaaaccgacttgcg
ctatgggaggactttgaactaagaggattcttgccactgcttcccgctcagactattctc
gacttctcaaggaaacattcctttgtaactgaaggtcccaaggaaaagaaagctcgtgta
aagaggatcctagcagcagggaaagctttgaccagtgtgatcaaagttgatgataatgat
gtgtattatgattctaagaagaagaagtttcttgttggtgtaaaaccctcagatgacttg
ttggattctcattcaagcccgcctaaagctgatgctttgcaagataaccaagtaatggtg
aatcataactcaccatttatacagcaagaccagcagatttatatgggtgaggaggatgat
gatgatgaagtaattgttttcaagccgctagttactgaaaagaggaaaacggcttctgac
caaatatgtgtttctagtggtggcttcaggaaacctgatcaagttgccactacggggaac
ttaaaacctctgagtggttcggattcagcttttcgtgaaaatcaacttctgcaagctaga
ggcaatgcgagtattcaagtgcctgcatctgttgattccaaccttttgggactccttcag
gcatcaacccagtctcaggcaatgcatttgcaacaagtgcagacacaggcagttaatcct
caggcagcccaatcattagctgctgcacgacttcagctaatgcaatcacaggtcgcacat
cttcaaccactgtcatcacgggttgtgcactttcaacaaactcaagctccggtttcacat
gtttcaccagtccagtcacaatctgcttcccttgttggtggtaccaagtggttaccagaa
gaagctgcttctcttgctaataccctatctagttttgctcagatgggtaatggtcatgtg
atgaaaaatgagatgcatggaaatcatggagtttcctatcaccctgcacactcagaacca
gcccagcagtcttacaatgtcaatggtatgggtggtatgccatattctcagtcactaaca
cctgaagctgtattcccacccaaaagtgatgctgtttcatcatctggagctattgccgat
ggcctgggcgtccaatcttcattagcaagaaaaaatccaatcagtagagcctttaggcat
cttggccctccgcctgggtttaactctgtcccctctaagctgcaaaaggagccagcacct
ggttctgacttgtctgggaacaatctagcggttgatgattacagctggttggatggatac
caagctcagtcttctcgaggcgctgctgcgctcaacagttctttgaattatgcttcttct
gggaaaccagaacacatgggtaccagcaatggaatgaatggggctactaacttcccattc
cctgggaaacaagttccaacatcacaggtccaagcagattttccatactttcaaaaccct
ctgaaagagagctttgcgaaccagaaccatcaatcagctcaactccctgagcaatatcaa
ggacagtcgacttggtcgagtcgtcactttgtgtga
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integrated database retrieval system
