Capsella rubella (pink shepherd's-purse): 17884677
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Entry
17884677 CDS
T02984
Name
(RefSeq) spliceosome-associated protein 130 A
KO
K12830
splicing factor 3B subunit 3
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
17884677
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
crb03021
]
17884677
03041 Spliceosome [BR:
crb03041
]
17884677
03036 Chromosome and associated proteins [BR:
crb03036
]
17884677
Transcription machinery [BR:
crb03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
17884677
Spliceosome [BR:
crb03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
17884677
Complex B
17884677
Complex C
U2 SnRNP specific factors
17884677
Chromosome and associated proteins [BR:
crb03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
17884677
TFTC complex
17884677
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
CPSF_A
Beta-prop_RSE1_2nd
Beta-prop_BBS7
WDR55
Motif
Other DBs
NCBI-GeneID:
17884677
NCBI-ProteinID:
XP_006293305
UniProt:
R0HQF5
LinkDB
All DBs
Position
Unknown
AA seq
1206 aa
AA seq
DB search
MYLYSLTLQQATGIICAINGNFSGGKTQEIAVARGKILDLLRPDENGKIQTIHSVEVFGA
IRSLAQFRLTGAHKDYIVVGSDSGRIVILEYNKEKNVFDKVHQETFGKSGCRRIVPGQYL
AVDPKGRAVMIGACEKQKLVYVLNRDTTARLTISSPLEAHKSHTICYSVCGVDCGFDNPI
FAAIELDYSEADQDPTGQAASEAQKHLTFYELDLGLNHVSRKWSEPVDNGANMLVTVPGG
ADGPSGVLVCAENFVIYKNQGHPDVRSVIPRRADLPAERGVLVVSAAVHKQKTMFFFLIQ
TEYGDIFKVTLDHNGDNVSELKIKYFDTIPVAASICVLKLGFLFSASEFGNHGLYQFQAI
GEEPDVESSSSNLMETEEGFQPVFFQPRKLKNLVRIDQVESLMPLMDMKVLNLFEEETPQ
IFSLCGRGPRSSLRILRPGLAITEMAVSQLPGQPSAVWTVKKNVSDEFDAYIVVSFTNAT
LVLSIGETVEEVNDSGFLDTTPSLAVSLIGDDALMQVHPNGIRHIREDGRINEWRTPGKR
SIVKVGYNRLQVVIALSGGELIYFEADMSGQLMEVDKHEMSGDVACLDIAPVPEGRQRSR
FLAVGSYDNTVRILSLDPDDCLQILSVQSVSSAPESLLFLEVQASIGGEDGADHPANLFL
NSGLQNGVLFRTVVDMVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXEFAAPFSSDQCAEGVVSVAGDALRIFMIDRLGETFNETVVPLRYTP
RKFVVQPKRKLLVIIESDQGAFTAEEREAARKECFEAGGMGENGNADQMENGADDEDKED
PLSDEQYGYPKAVSEKWVSCIRVLDPKTATTTCLLELQDNEAAYSVCTVNFHDKEYGTLL
AVGTVKGMQFWPKKNLVAGFIHIYRFVEDGKSLELLHKTQVEGVPLALCQFQGRLLAGIG
PVLRLYDLGKKRLLRKCENKLFPNTIISIQTYRDRIYVGDIQEYRRDENQLYIFADDCVP
RWLTASHHVDFDTMAGADKFGNVYFVRLPQDVSEEIEEDPTGGKIKWEQGKLNGAPNKVD
EIVQFHVGDVVTCMQKASMIPGGSESLMYGTVMGSIGALHAFTSRDDVDFFSHLEMHMRQ
EYPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPMDLQRKIADELDRTPAEILKKLED
ARNKII
NT seq
3621 nt
NT seq
+upstream
nt +downstream
nt
atgtatctgtacagtctaactctgcagcaggcgacgggaatcatctgcgcgatcaacggg
aacttctccggtgggaagacacaggagattgcggtagctcgtggcaagattctggacctt
ctccgtccggacgagaacggtaagatccaaacgatacactctgtggaagtatttggtgca
attagatccttagctcagtttaggttgactggtgcgcacaaggattatatagtggttggc
tcagattcgggtaggatagttatactcgagtacaacaaggagaagaatgtgttcgataaa
gttcatcaggagacttttggcaagtcgggctgcagaagaattgtgccaggccagtacttg
gctgtcgatcccaaagggagagctgttatgattggagcttgtgagaagcagaaattggtt
tacgttttgaacagagatactactgctaggttaaccatttcttctcccttggaagctcac
aagtctcataccatttgctattctgtctgcggtgtcgactgtggcttcgataaccccatt
tttgcagccattgagcttgattactccgaggcagatcaggatcccactggccaagccgca
agtgaggctcagaagcatctgactttctatgagctcgatttggggctcaaccatgtctct
agaaagtggtcagaaccagttgacaatggtgctaatatgcttgttactgttcctggagga
gctgatggcccaagtggagttttggtttgcgctgagaattttgttatttacaagaatcag
ggtcatccagacgtgagatccgtgattcctagacgagctgatttgcctgctgaacgagga
gttttggtagtttctgccgccgtgcacaagcaaaagacaatgttcttctttttaattcag
accgagtatggcgacattttcaaggttactctggatcacaatggcgataatgtctccgaa
ttgaagatcaagtattttgatacaattccagttgctgcatccatttgcgttttgaagctg
ggatttcttttctctgcctcagaatttggaaaccatggtctgtatcagtttcaggccata
ggagaggaacctgacgtagagtcttcatcctctaatctgatggagactgaagaaggtttt
cagcctgtcttttttcaacctagaaaacttaagaaccttgttaggattgaccaagtcgag
agtctgatgccactcatggacatgaaagtcctaaacctttttgaggaagaaacccctcag
atcttttcactttgtgggcgcggtccgcgctcctctctaaggatactgagacctggattg
gccatcactgagatggctgtctctcagcttccaggtcagccaagtgctgtgtggacagtg
aagaagaatgtgagcgatgagtttgatgcatatatcgttgtctcttttaccaatgccact
cttgttctttcgattggtgaaacagttgaagaagttaacgacagtgggtttcttgatact
accccatccctggctgtctctctgatcggcgatgatgctctcatgcaagtccatcccaat
ggtatccgccacataagggaagatggacgtattaacgaatggagaactcctggcaagagg
tcaattgttaaagttgggtataatcggcttcaagtggtcattgcattgagtgggggagag
cttatatactttgaggcagatatgtcgggtcagctgatggaggtggataaacatgaaatg
tctggtgatgtggcttgcctggacatagcgcctgttcctgaaggaagacaaagatctcgc
tttcttgccgtgggatcctatgataatactgtgcgcattctgtctctggatcctgacgac
tgtctgcagattctcagcgtgcaaagtgtctcttcagctccggagtctctgctattcctc
gaagttcaggcatcgattggtggagaggatggtgctgatcacccggcaaatctcttcctt
aattctggtctgcagaatggtgttcttttcagaacggtggtggatatggtnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaatttgctgcccccttt
tcatctgatcagtgcgccgaaggtgtagtctctgtcgccggagatgctctgagaatattt
atgatcgaccgtcttggtgaaacgttcaacgaaacagtggtccctctgaggtacacgcct
agaaagtttgttgtccaacccaagcggaagttgttggttattatcgagagtgaccaggga
gcattcaccgcagaagagcgtgaagctgcaaggaaggagtgcttcgaggctggtggaatg
ggagaaaatggtaatgcagatcagatggagaatggtgcggatgatgaagataaggaagac
ccgctttctgatgagcagtatggttatccaaaagcagtgtctgaaaagtgggtttcttgc
atcagagttcttgatcctaagacagctacgacaacttgcctcctggaacttcaggacaac
gaagctgcatacagtgtctgtacggtgaatttccatgataaagagtatggtactttgttg
gctgttggtacggtcaaagggatgcagttctggcccaaaaaaaatctagtggctgggttc
atacatatttataggtttgtggaggatgggaaatctcttgagcttctccataagacgcaa
gtagaaggtgttcctcttgctctgtgccagttccaaggaagactgctggcagggattgga
cctgtcctcagattgtatgatttggggaaaaagagactgcttaggaaatgtgaaaacaag
ctctttccaaacaccattatctctatccaaacttaccgagaccgtatatacgttggtgac
atccaggagtacaggcgcgatgagaatcagctatacatatttgcggatgactgcgtcccg
aggtggctgacagcatcgcaccatgtggattttgataccatggcaggtgctgataagttt
gggaatgtgtattttgtgcggttgcctcaggatgtgtcggaggagatagaagaagacccg
acaggcgggaagatcaagtgggagcaaggaaagctgaatggagcaccgaacaaagtggat
gagatagtacagttccacgttggggacgttgtgacgtgcatgcagaaagcttcgatgatc
ccaggtggatcggaatccttaatgtatggaacagtgatgggtagcataggggcattacat
gctttcacatcccgtgatgatgtcgatttcttctctcatctggagatgcacatgaggcag
gagtaccctcctctctgcgggagagaccacatggcttacagatctgcatattttcccgtc
aaggatgtgatagatggagatctgtgtgagcagttcccgacgcttccaatggacttgcag
aggaaaatagcagacgagttggatagaacaccggcggagattctgaagaagctagaagac
gctaggaataagatcatttaa
DBGET
integrated database retrieval system
