Capsella rubella (pink shepherd's-purse): 17884858
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Entry
17884858 CDS
T02984
Name
(RefSeq) cysteine protease ATG4b isoform X1
KO
K08342
cysteine protease ATG4 [EC:3.4.22.-]
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb04136
Autophagy - other
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09140 Cellular Processes
09141 Transport and catabolism
04136 Autophagy - other
17884858
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
crb01002
]
17884858
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
crb04131
]
17884858
03029 Mitochondrial biogenesis [BR:
crb03029
]
17884858
Peptidases and inhibitors [BR:
crb01002
]
Cysteine peptidases
Family C54: Aut2 peptidase family
17884858
Membrane trafficking [BR:
crb04131
]
Autophagy
Autophagosome formation proteins
Atg8 conjugation proteins
17884858
Mitochondrial biogenesis [BR:
crb03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
17884858
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Peptidase_C54
Motif
Other DBs
NCBI-GeneID:
17884858
NCBI-ProteinID:
XP_006292861
UniProt:
R0H8S7
LinkDB
All DBs
Position
Unknown
AA seq
474 aa
AA seq
DB search
MKAICDRFVPTKCSSSSTSEKCDKSRTSLVSDSVSSDNKSNLAVCPDVVASSSPVSQPYR
EASTSEHKPDCTPHNSWTVILKTASMASGAIRRFQERVLGPSRTGISSSTSEIWLMGVCY
KISEGESSEEADSGHVLTAFGQDFSSLILMTYRRGFGPIGDTTYTSDVNWGCMLRSSQML
FAQALLFQRLGRSWRKKESETPEEEYLGILEHFGDSEASAFSIHNLILAGESYGLAAGSW
VGPYAVCRSWESLVRKKREETDVKNKLFSMAVHIVSGSEDGERGGAPILCIEDVTKTCVE
FSDRETEWTPVLLLVPLVLGLDKVNPRYLPSLIATFTFPQSLGILGGKPGASTYIVGVQE
DKGFYLDPHDVQQVVTVNKETRDVDTSSYHCNTPRYVPLESLDPSLALGFYCPDKADFDD
FCIRATKLAADSNGAPLFTVTQSHRTNDCGIAESSTLTSTEICGEEHEDEWQLL
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atgaaggctatatgtgataggtttgttcctacaaaatgttcttcatcaagcacaagtgaa
aagtgtgataaatcccggacatctctagtttcagattcggtatctagtgataacaagtca
aacttggccgtatgcccggatgtggttgcatcttcctccccagtttctcaaccgtatagg
gaagcgtctacttccgagcataagccagattgcaccccacataacagttggacagttatt
ttaaaaacagcttctatggctagtggggcaattaggagatttcaagagcgtgtattaggg
ccgagtcggactggtatttccagcagcacaagtgagatatggctcatgggtgtctgttat
aaaatctcagagggtgaatcctcagaagaagcagattctggtcatgtcttgactgcattc
ggacaagatttttcatccttaatactaatgacatatcgtagaggttttgggcctattggc
gacacaacttatactagtgatgtaaactggggatgtatgcttcgaagcagccagatgctc
ttcgcacaggcattgctattccaaaggctgggaaggtcttggaggaaaaaggaatccgag
acgcctgaagaggaatacttagggatattagaacattttggtgattctgaggcttcagca
ttctctattcacaatcttatactagctggagaatcttatggcctggccgctggctcatgg
gtaggaccatatgctgtctgtcgatcatgggaatcattagttcggaagaaaagagaagaa
actgatgttaaaaacaagttgttttccatggctgttcatatcgtttctggcagtgaagat
ggagagagaggtggagctccaattctctgtattgaagatgtcaccaaaacttgtgtggaa
ttttcagacagagaaactgagtggacgccagttcttctcttggtgccactggttctcggg
cttgacaaagtgaaccccaggtaccttccatctttgatagccactttcactttcccgcaa
agccttggcattttgggcggcaaaccaggtgcatcaacttacatagttggagttcaagaa
gacaaaggtttctaccttgatccgcacgatgttcaacaggtagtgacagtcaacaaagaa
actagggatgttgacacatcgtcttaccattgcaatacgccccgctatgttccgctggag
tcacttgacccgtcactagctctgggattctattgccctgacaaagctgattttgatgat
ttctgtatccgagcaacaaaactagctgcagactccaatggtgctcctctcttcaccgtt
acacaatcccacagaacaaatgactgcggaattgcagaaagcagcacattgacatctaca
gagatctgtggtgaggaacatgaagatgagtggcaattactttga
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