Capsella rubella (pink shepherd's-purse): 17885029
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Entry
17885029 CDS
T02984
Name
(RefSeq) uncharacterized protein LOC17885029 isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
17885029
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
crb03000
]
17885029
03019 Messenger RNA biogenesis [BR:
crb03019
]
17885029
04121 Ubiquitin system [BR:
crb04121
]
17885029
Enzymes [BR:
crb01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
17885029
Transcription factors [BR:
crb03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
17885029
Messenger RNA biogenesis [BR:
crb03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
17885029
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
17885029
Ubiquitin system [BR:
crb04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
17885029
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
Baculo_IE-1
zf-UDP
zf-RING_2
PcfJ
Rtf2
Motif
Other DBs
NCBI-GeneID:
17885029
NCBI-ProteinID:
XP_023637750
LinkDB
All DBs
Position
Unknown
AA seq
987 aa
AA seq
DB search
MKKMSDYGEKTCPLCAEEMDLTDQQLRPCKCGYQICVWCWHHIMDMAEKDQSEGRCPACR
TPYDKEKIVGMTVDQRLTSEGNMDRKKTQKSKLKPSEGRKQLTSVRVVQRNLVYIVGLPL
NLADEDLLQRKEYFGQYGKVLKVSMSRTATGLIQQFPNNTCSVYITYGKEEEAVRCIQSV
HGFILDGKSLKACFGTTKYCHAWLRNVACNNPDCLYLHEVGSQEDSFTKDEIISAYTRVQ
QITGASNTMQYRSGSMLPPPLDAYCSDSSTAKPIAKVPSTTAVNVPKSSPPSGSSGKSTA
LPAAASWGARLTNQNSLATSAMSNGSLDNQRSTSENGTLAMSTVVANGPVFSSNTLQKPP
HKEKIQILAEKSKPGVLKPLQHNNVVDPGSKRTTSPNRDASSNQISCLVESSHNSRVIDK
PSAVESSFEHTDEIAEDVPDVSNLSANVARMGITTNSKDEGPSVPVTIGTYCDQGSIRQP
GNDVSNLEQYGKHSPTNTDAESDILQNGIHGSRPEWNWSSGSQSQIDVRSTLEVDDFTSF
NNNRRDVAEAVSNSSYMFSSSSSALDSNNLASHSLQNRETSGRMDYNIGSSFDIGNDRLH
LPNGFSEKPISSMEHSLFGNEGKSNIQKAEEDIISNILDFDPWDDTLTSPHNFAKLLGQS
NHRASTLESSNLLKQHNDQSRFSFARHEESNNQVYDNKSYSIYGQLSRYQPLQEFGVSRD
MYHDKLGSQNGFASNYSGGYEQFAATPGLSSSKSPVARTQVSAPPGFSAPNRLPPPGFSS
HERTDVSSDSASGTRLLDAAAFLKNTYNIPSPSGNSNAAGDIEFMDPAILAVGRGRVHNV
METADFDMRSGFSSQLNSFENDARLQLLAQRSLAAQQVNGFHDPRNVNNFSSSLADPYGI
SSRLMDQTQGTGLSPFTQLPRQASPNSLLSNGHWDKWNDPQSVNTLGITQLLRNEQMGFN
DNVYNRFEEPKYRRPSPGDPYNRTYGM
NT seq
2964 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaaatgagtgattacggtgaaaagacttgcccattgtgtgcagaggagatggat
ttgactgaccagcaattgaggccttgcaaatgtggctatcagatttgtgtttggtgctgg
caccacataatggacatggcagagaaagatcaatcagaagggcgctgtccagcttgccgc
actccttatgacaaagaaaagattgttgggatgactgttgatcagagactgacctctgaa
ggcaacatggatcgcaaaaaaacacaaaagtcaaaattgaaaccttctgaagggagaaag
caactaactagtgttcgagtggttcaaagaaatcttgtttacattgttgggttaccacta
aatctagcagatgaagatcttctccagcgtaaagaatattttggtcagtatggaaaggtt
ctaaaggtttccatgtcccgaacagcaacgggtctcattcaacagttccctaacaataca
tgcagtgtatatatcacttatggcaaagaggaagaggctgttcgatgcattcagtccgtt
catgggtttatcttggatggtaaatcactgaaggcatgttttgggacaaccaaatattgt
catgcatggttaagaaacgtggcatgcaacaatcctgattgcctctatctgcatgaggtg
ggctcccaagaggatagttttacaaaggatgagatcatatcagcttatacaagagttcag
caaatcactggagcctcaaatactatgcaataccgttcagggagcatgctaccaccacca
ttggatgcttattgcagtgacagttctactgcaaaaccaattgcaaaagttccatctact
accgcagttaatgttcccaagagttctccacctagtgggagctctggtaaatcaactgct
cttcctgctgcagcatcatggggggcacgtttaacaaatcaaaattctttagcaacttca
gctatgtcaaatggatctttggataatcaaagatcaacatcggagaatggaacgttggct
atgtctacagttgttgcaaatgggcctgtattttctagtaacactcttcaaaaaccacct
cacaaggaaaaaatccaaatattggctgaaaaaagcaaacctggcgtgttgaagcctttg
cagcataacaatgtggtggatcctgggtccaagagaactacatcacctaatagagatgct
agtagcaatcagatatcctgtttagtagaatcgtcacacaatagcagagtcattgacaag
ccttctgctgttgagagttcttttgaacacacagatgaaattgctgaagatgtccctgat
gttagtaacttgtcggctaatgttgcacggatggggataactacaaattctaaggatgaa
ggccctagtgttccagtgactattggtacttattgtgatcaaggttctattagacaacct
ggtaatgatgtatcaaatctcgagcaatatggaaaacattctcctacaaacactgatgca
gaatctgacatattacaaaatgggattcatggttcaaggccagagtggaattggagttca
ggttcacaatcccagatagatgttaggtctacgttggaagtggatgatttcacatcattc
aataacaataggcgagatgtcgcggaggctgttagcaactcatcgtatatgtttagctca
tcaagttctgccctggattcgaataatctagcttctcattctttacagaacagggaaact
tctggaaggatggattataatattggatcctcctttgacataggtaacgatagattgcat
cttccaaatggattttctgagaaaccaatatccagtatggagcattctttatttggtaat
gaagggaagagcaacattcagaaagcagaggaggatataatttcaaacattttagacttt
gatccctgggatgataccttgacttcaccacacaattttgcaaaattacttggccagagt
aatcatagggccagtactttggaatcttctaacctcctaaagcaacataatgaccagtcc
agattctcttttgctcggcatgaagaatcaaataatcaagtgtatgacaataagagttac
agcatctatgggcagttgtcaagatatcagcctcttcaagagtttggagtgagccgtgat
atgtatcatgataagcttgggagtcaaaatggttttgcctcaaattattccggtggatat
gaacaatttgctgctactcctggattatcttcttccaagagtcccgtggcaaggactcaa
gtctctgctcctcctggattctctgctcccaacaggttacctcctcccggtttctcttca
catgaaaggactgatgtgtcttctgatagtgcatcaggaactcgtttacttgatgcggcc
gcttttttgaagaacacatataatataccatctccaagtggcaattcaaatgctgctgga
gatattgagtttatggatcctgcaattttagctgttggaaggggaagagttcacaatgtg
atggaaacagcagacttcgatatgagatcagggttctcttctcagctgaattcctttgag
aacgatgcaagacttcaattgttggcgcagaggtctctggctgcacaacaagtcaatgga
tttcacgatcccaggaacgttaacaacttctcttcttcactcgcagacccatatgggatt
agttcgaggctaatggatcaaactcaaggcactggcttatctcctttcacacagttgcct
agacaagcttcaccaaattcattgttgtcaaatggacactgggataagtggaatgatccc
caaagtgttaacactcttggtatcacccagcttctaaggaacgaacagatgggatttaat
gacaatgtctacaaccgttttgaagagcctaaataccggaggcccagtccgggagatccg
tacaacagaacatacgggatgtga
DBGET
integrated database retrieval system
