Capsella rubella (pink shepherd's-purse): 17885541
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Entry
17885541 CDS
T02984
Name
(RefSeq) probable cyclic nucleotide-gated ion channel 16
KO
K05391
cyclic nucleotide gated channel, plant
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb04626
Plant-pathogen interaction
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09150 Organismal Systems
09159 Environmental adaptation
04626 Plant-pathogen interaction
17885541
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
crb04040
]
17885541
Ion channels [BR:
crb04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
17885541
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SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
cNMP_binding
UBM
Motif
Other DBs
NCBI-GeneID:
17885541
NCBI-ProteinID:
XP_006292360
UniProt:
R0HMU1
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All DBs
Position
Unknown
AA seq
703 aa
AA seq
DB search
MSNLHLYTSARFRNFPTAFSLRHNNNDPNNQRRRSIFSELRNKTLDPRGDLITRWNHIFL
VTCLLALFLDPLYFYLPIVQAGTACMSIDVSFGILVTFFRTLADLSFLIHIFLKFKTAFV
SKSSRVFGRGELVMDRREIAIRYLKTEFVIDLAASLPLPQIMIWFVIPNAGEFRYAAHQN
HTLSLIVLIQYVPRFVVMLPLNRRIIKATGVAAKTAWSGAAYNLILYLLVSHVLGSVWYV
LSIQRQHECWRRECIKEMNATHSPSCTLLFLDCGSLQDPGRQAWMRITRVLSNCDARNDD
DQHFQFGMFGDAFTNDVTSSPFYDKYFYCLWWGLRNLSSYGQSLAASTLSSETIFSCFIC
VAGLVFFSHLIGNVQNYLQSTTARLDEWRVRRRDTEEWMRHRQLPEELQERVRRFVQYKW
LTTRGVDEEAILRALPLDLRRQIQRHLCLALVRRVPFFAQMDDQLLDAICERLVPSLNTK
DTYVTREGDPVNEMLFIIRGQVESSTTDGGRSGFFNSITLRPGDFCGEELLTWALMPNIT
VNLPLSTRTVKTLSEVEAFALRAEDLKFVANQFRRLHSKKLQHAFRYYSHQWRAWGTCFI
QAAWRRYVKRKLAMELARQEEGEDYYYDDDEDYQYDETMPESSNGEENSSNNQNLSATIL
ASKFAANTKRGVLGNQRGSSRIDPDDPSLKMPKMFKPEDPGFF
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atgagcaatctccatctttacacctcggcacgcttccgcaattttccgacggcattttct
ctacgtcataacaacaacgaccctaacaaccaacgccgccgatccatcttctctgaactc
cgtaacaaaaccctcgatccgagaggtgacctaatcacgagatggaaccacatcttcctc
gtcacatgccttctcgctctctttctcgatcctctttatttctatctccccattgtccaa
gccggaaccgcatgtatgtccatcgacgtcagttttggtatcctcgtcacctttttccga
accctagctgatctttcctttctcatccacattttcctcaaattcaaaaccgcctttgtc
tccaaatcatcaagagtctttggtcgtggagagcttgtcatggatcgtcgtgaaattgcc
attcgctaccttaaaactgagttcgtcattgacctcgctgcctcgcttcctcttcctcag
ataatgatttggtttgtgataccaaatgctggagaattcagatacgcagctcatcagaac
cacacactttccttgatcgtcctgatacagtacgtaccacgcttcgtcgtcatgcttcct
ctcaaccgaaggatcattaaagcaaccggtgtcgcagccaaaacagcatggtctggtgca
gcatacaatctcatcctctacttgcttgtgagccacgttcttggatcggtttggtacgtt
ttatcgatccaaagacagcatgaatgctggagaagagagtgcattaaagagatgaacgca
acgcattcaccatcttgtacgctcttgtttctagattgtggatcattgcaagatccaggt
agacaagcttggatgcggattactcgggttctctcaaattgtgatgcacgcaatgacgat
gaccagcattttcagtttggtatgttcggtgatgcgttcactaatgatgtcacctcttct
cctttctatgataaatacttctactgtctttggtggggtcttcgtaacctcagttcttat
ggacaaagtcttgcagcgagtacactgagtagtgagactatattcagttgtttcatctgt
gttgcggggctagttttcttctctcatctcattggaaatgttcagaactatctacaatcg
acgacggctaggttagatgaatggagagtcagaagaagagacacagaggaatggatgcga
cataggcaattgccagaagagttacaagagcgtgtaaggcgattcgtccaatacaaatgg
ctaacgactcgtggagtcgatgaagaagctatcctacgggctctaccgctggatcttcgt
cgccagatccaacgacatctctgtcttgccctcgttcgccgagtgccgttcttcgcacag
atggatgaccagctcttggatgcgatatgtgagcgtctagttccatccttgaacacaaaa
gacacgtatgtgacgcgtgaaggcgatcctgtaaacgagatgcttttcatcattagaggt
caggtggagagttcaactacagatggtggacggtcagggttttttaactccatcacgctt
agaccaggagatttctgcggtgaagaacttttaacttgggctttaatgccaaatattact
gttaatctgccattgtccactagaaccgttaagactctctctgaggtagaagctttcgct
ctccgagcagaggacttgaagttcgtagctaaccaattcagacgtctccacagcaagaaa
ctccaacatgctttcagatactattcacatcaatggagagcatggggaacttgttttata
caagctgcgtggagacggtacgtgaagaggaagttagcaatggaattagcaaggcaagag
gaaggagaggactactattatgatgatgatgaagactatcaatacgatgagaccatgccg
gagagtagtaacggagaggagaacagcagcaataatcagaatttgagtgcgacgatatta
gcgtctaagtttgcggctaatacgaagagaggtgttttagggaaccaaagagggtcttca
agaattgatcctgatgatccatctttgaagatgcctaaaatgtttaaaccagaggatcca
ggatttttctaa
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