Capsella rubella (pink shepherd's-purse): 17886063
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Entry
17886063 CDS
T02984
Name
(RefSeq) spliceosome-associated protein 130 A
KO
K12830
splicing factor 3B subunit 3
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
17886063
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
crb03021
]
17886063
03041 Spliceosome [BR:
crb03041
]
17886063
03036 Chromosome and associated proteins [BR:
crb03036
]
17886063
Transcription machinery [BR:
crb03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
17886063
Spliceosome [BR:
crb03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
17886063
Complex B
17886063
Complex C
U2 SnRNP specific factors
17886063
Chromosome and associated proteins [BR:
crb03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
17886063
TFTC complex
17886063
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
CPSF_A
Beta-prop_RSE1_2nd
Beta-prop_BBS7
WDR55
Motif
Other DBs
NCBI-GeneID:
17886063
NCBI-ProteinID:
XP_006293329
UniProt:
R0FTM6
LinkDB
All DBs
Position
Unknown
AA seq
987 aa
AA seq
DB search
MYLYSLTLQQATGIICAINGNFSGGKTQEIAVARGKILDLLRPDENGKIQTIHSVEVFGA
IRSLAQFRLTGAHKDYIVVGSDSGRIVILEYNKEKNVFDKVHQETFGKSGCRRIVPGQYL
AVDPKGRAVMIGACEKQKLVYVLNRDTTARLTISSPLEAHKSHTICYSVCGVDCGFDNPI
FAAIELDYSEADQDPTGQAASEAQKHLTFYELDLGLNHVSRKWSEPVDNGANMLVTVPGG
ADGPSGVLVCAENFVIYKNQGHPDVRSVIPRRADLPAERGVLVVSAAVHKQKTMFFFLIQ
TEYGDIFKVTLDHNGDNVSELKIKRACLIALSGGELIYFEADMSGQLMEVDKHEMSGDVA
CLDIAPVPEGRQRSRFLAVGSYDNTVRILSLDPDDCLQILSVQSVSSAPESLLFLEVQAS
IGGEDGADHPANLFLNSGLQNGVLFRTVVDMVTGQLSDSRSRFLGLKPPKLFSISVRGRS
AMLCLSSRPWLGYIHRGHFHLTPLSYDTLEFAAPFSSDQCAEGVVSVAGDALRIFMIDRL
GETFNETVVPLRYTPRKFVVQPKRKLLVIIESDQGAFTAEEREAARKECFEAGGMGENGN
ADQMENGADDEDKEDPLSDEQYGYPKAVSEKWVSCIRVLDPKTATTTCLLELQDNEAAYS
VCTVNFHDKEYGTLLAVGTVKGMQFWPKKNLVAGFIHIYRFVEDGKSLELLHKTQVEGVP
LALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIISIQTYRDRIYVGDIQESF
HYCKYRRDENQLYIFADDCVPRWLTASHHVDFDTMAGADKFGNVYFVRLPQDVSEEIEED
PTGGKIKWEQGKLNGAPNKVDEIVQFHVGDVVTCMQKASMIPGGSESLMYGTVMGSIGAL
HAFTSRDDVDFFSHLEMHMRQEYPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPMDL
QRKIADELDRTPAEILKKLEDARNKII
NT seq
2964 nt
NT seq
+upstream
nt +downstream
nt
atgtatctgtacagtctaactctgcagcaggcgacgggaatcatctgcgcgatcaacggg
aacttctccggtgggaagacacaggagattgcggtagctcgtggcaagattctggacctt
ctccgtccggacgagaacggtaagatccaaacgatacactctgtggaagtatttggtgca
attagatccttagctcagtttaggttgactggtgcgcacaaggattatatagtggttggc
tcagattcgggtaggatagttatactcgagtacaacaaggagaagaatgtgttcgataaa
gttcatcaggagacttttggcaagtcgggctgcagaagaattgtgccaggccagtacttg
gctgtcgatcccaaagggagagctgttatgattggagcttgtgagaagcagaaattggtt
tacgttttgaacagagatactactgctaggttaaccatttcttctcccttggaagctcac
aagtctcataccatttgctattctgtctgcggtgtcgactgtggcttcgataaccccatt
tttgcagccattgagcttgattactccgaggcagatcaggatcccactggccaagccgca
agtgaggctcagaagcatctgactttctatgagctcgatttggggctcaaccatgtctct
agaaagtggtcagaaccagttgacaatggtgctaatatgcttgttactgttcctggagga
gctgatggcccaagtggagttttggtttgcgctgagaattttgttatttacaagaatcag
ggtcatccagacgtgagatccgtgattcctagacgagctgatttgcctgctgaacgagga
gttttggtagtttctgccgccgtgcacaagcaaaagacaatgttcttctttttaattcag
accgagtatggcgacattttcaaggttactctggatcacaatggcgataatgtctccgaa
ttgaagatcaagcgtgcttgtctcattgcattgagtgggggagagcttatatactttgag
gcagatatgtcgggtcagctgatggaggtggataaacatgaaatgtctggtgatgtggct
tgcctggacatagcgcctgttcctgaaggaagacaaagatctcgctttcttgccgtggga
tcctatgataatactgtgcgcattctgtctctggatcctgacgactgtctgcagattctc
agcgtgcaaagtgtctcttcagctccggagtctctgctattcctcgaagttcaggcatcg
attggtggagaggatggtgctgatcacccggcaaatctcttccttaattctggtctgcag
aatggtgttcttttcagaacggtggtggatatggtgactggtcagctttcggattctcgt
tcccggttcttgggactgaagcctcccaagttattctccatttctgtgagaggtcggtct
gcaatgctgtgtttgtctagccggccttggcttggttatattcatcgaggacacttccac
ttgacgccactttcttacgacactttagaatttgctgcccccttttcatctgatcagtgc
gccgaaggtgtagtctctgtcgccggagatgctctgagaatatttatgatcgaccgtctt
ggtgaaacgttcaacgaaacagtggtccctctgaggtacacgcctagaaagtttgttgtc
caacccaagcggaagttgttggttattatcgagagtgaccagggagcattcaccgcagaa
gagcgtgaagctgcaaggaaggagtgcttcgaggctggtggaatgggagaaaatggtaat
gcagatcagatggagaatggtgcggatgatgaagataaggaagacccgctttctgatgag
cagtatggttatccaaaagcagtgtctgaaaagtgggtttcttgcatcagagttcttgat
cctaagacagctacgacaacttgcctcctggaacttcaggacaacgaagctgcatacagt
gtctgtacggtgaatttccatgataaagagtatggtactttgttggctgttggtacggtc
aaagggatgcagttctggcccaaaaaaaatctagtggctgggttcatacatatttatagg
tttgtggaggatgggaaatctcttgagcttctccataagacgcaagtagaaggtgttcct
cttgctctgtgccagttccaaggaagactgctggcagggattggacctgtcctcagattg
tatgatttggggaaaaagagactgcttaggaaatgtgaaaacaagctctttccaaacacc
attatctctatccaaacttaccgagaccgtatatacgttggtgacatccaggagtcgttc
cattactgcaagtacaggcgcgatgagaatcagctatacatatttgcggatgactgcgtc
ccgaggtggctgacagcatcgcaccatgtggattttgataccatggcaggtgctgataag
tttgggaatgtgtattttgtgcggttgcctcaggatgtgtcggaggagatagaagaagac
ccgacaggcgggaagatcaagtgggagcaaggaaagctgaatggagcaccgaacaaagtg
gatgagatagtacagttccacgttggggacgttgtgacgtgcatgcagaaagcttcgatg
atcccaggtggatcggaatccttaatgtatggaacagtgatgggtagcataggggcatta
catgctttcacatcccgtgatgatgtcgatttcttctctcatctggagatgcacatgagg
caggagtaccctcctctctgcgggagagaccacatggcttacagatctgcatattttccc
gtcaaggatgtgatagatggagatctgtgtgagcagttcccgacgcttccaatggacttg
cagaggaaaatagcagacgagttggatagaacaccggcggagattctgaagaagctagaa
gacgctaggaataagatcatttaa
DBGET
integrated database retrieval system
