Capsella rubella (pink shepherd's-purse): 17886087
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Entry
17886087 CDS
T02984
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial isoform X2
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
17886087
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crb03019
]
17886087
03012 Translation factors [BR:
crb03012
]
17886087
Enzymes [BR:
crb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
17886087
Messenger RNA biogenesis [BR:
crb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
17886087
Translation factors [BR:
crb03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
17886087
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
dsrm
DEAD
HA2_N
AAA_22
nSTAND3
NPHP3_N
Dicer_dimer
ATPase
AAA_19
ABC_tran
NACHT
AAA_11
PhoH
ATPase_2
AAA_23
Motif
Other DBs
NCBI-GeneID:
17886087
NCBI-ProteinID:
XP_006290527
UniProt:
R0HEG0
LinkDB
All DBs
Position
Unknown
AA seq
1118 aa
AA seq
DB search
MMKDHRLPPSVYVPPHQRLRSDYALHPLPLSPVRFVSAYDDRVSEDREPGAFHCANLDEW
NRKFSMLLHDSVTQEVVSREKKDRRDFDKLAALATTLGLYSHAYAKVVVFSKIPLPNYRF
DLDDKKPQREVDLHIDLLQRVEAYLREYLSKNSKSVDRFPANSLARTSSISSPDEWLFEQ
PDPMAASNTTLDKILWRKSLQLRDRQEYWEASVEGRRMVESRRSLPAFKQRDSVLTAISK
NQVIVISGETGCGKTTQIPQFILESEIDANRGALCSIICTQPRRISAMSVSERVAYERGE
QLGESVGYKVRLEGVRGRDTRLLFCTTGILLRRLLVDRNLRGVTHVIVDEIHERGMNEDF
LLIILKDLLSRRPELKLILMSATLDAELFSSYFCGASVIHIPGFTYPVRSHFLEDILEMT
RYRLTPYNQIDDYGQERTWKMHKQIPKKRKSQIAFVVEDALRAADFKEFSTETQESLSCW
NPDCIGFNLIEFLLWHICENEGPGGILVFMTGWDDISSLKEKLQIHPIFGNPDRIMLLAC
HGSMASFEQRLIFEEPASGVRKIILATNIAETSITINDVAFVIDCGKAKETSYDALNNTP
CLLPSWISKVSAQQRRGRAGRVRPGQCYHLYPKCVYDAFAEYQLPEILRTPLQSLCLQIK
SLNLGSISEFLLRALQSPELLAVQKAIEYLKIIGALDENEYLTTLGRYLSKLPMEPKLGK
MLILGAILGCLDPILTVVAGLSVRDPFLTPQDKKDLADAAKFQFSRDHSDHLALVRAYEG
WKKAEEESAVYDYCWKNFLSIQSMRAIDSLRKEFFSLLKDTGLIDGNPSICNSEGNDANL
TRAVICYGMYPGICSVVHNDRSFSLKTMEDGQVLLYSNSVNARERKIPYPWLVFNEKIKV
NSVFLRDSTAVSDSTLILFGGSISKGDIDGHLKMLGGYLEFFMKPVVAEICQTLKKELAE
LIQNKLLNPKVDMQAHHELLSAIRLLVSGDGCDGRFVFGRQILRPLETSALSTNSTLLSR
TESGPGGDNSKSQLQTILTRAGYAAPMYKTKQLKNNKFQTTVEFNETQIMGQPCSNKKSA
EKDAAAEAIQWLRGGAKESHEQVNHMSNLLKKSKKDHL
NT seq
3357 nt
NT seq
+upstream
nt +downstream
nt
atgatgaaggatcatcgtcttcctccttccgtctacgtcccgcctcaccagcgccttcgt
tccgattacgccttacatcctcttcctctctctcccgttcgttttgtctccgcttatgat
gaccgcgtttccgaggatcgcgaaccgggtgcctttcattgtgccaacttggatgaatgg
aataggaaattttctatgcttttgcacgattccgtaactcaagaagttgtctccagggag
aaaaaagatagaagggattttgataaacttgctgcactggctacaaccctcggattgtat
agtcatgcatatgctaaggttgttgtgttcagtaagatcccactccccaactataggttt
gatctagatgacaagaagccacagagggaggtggatttgcatattgaccttcttcaaaga
gttgaagcttacctcagagaatacctcagtaaaaactcaaagagtgttgatagattccct
gccaattccttggcaagaactagtagcataagcagtcctgatgaatggctttttgagcaa
ccagatcccatggctgctagcaatactaccctggacaaaattctttggcgaaaaagtttg
cagctgcgtgatcgacaagaatattgggaggcatcagtagaaggccgaagaatggtcgaa
tctcggagaagtctccctgctttcaagcaaagggattcagtattgacagcaatttcaaaa
aatcaggttattgttatctctggagaaacaggttgtggcaagaccacacaaattccacaa
tttatattagaatccgagattgatgcaaaccgtggagctttatgcagtatcatatgtact
caaccaaggagaatatctgctatgtctgtatcggagagggttgcttacgagagaggagag
cagttaggtgaatccgttggatataaagttcgactggaaggtgttagaggaagagatacc
cgcctactcttctgcaccacaggcattttgttgagacggttgttggtagatagaaattta
agaggtgttactcatgttatcgttgatgaaattcatgagcgtggaatgaatgaagatttc
cttcttatcattcttaaggatctgctatctcgtcgcccagagcttaagctgattctgatg
agtgcaactttagatgctgagcttttttcgtcatacttttgtggggcaagtgtcattcac
attccaggatttacatatccagttcgcagtcatttcctagaggatattctggagatgacc
aggtacagactgactccatacaatcaaattgatgattatggtcaagaaagaacgtggaag
atgcacaaacagatcccaaaaaaacggaagagccaaattgcctttgttgttgaggacgca
ctgagagcggctgacttcaaggagtttagcactgagactcaagagtctttatcttgttgg
aatcctgattgtattggtttcaatctcatagaatttctcctttggcatatatgtgagaat
gagggccctggtggtattttagtttttatgactgggtgggatgatatcagctctctgaaa
gaaaaactgcagatacatccaatctttggcaacccagatcggattatgttacttgcctgc
catggttctatggcaagttttgagcagaggttgatatttgaagaacctgcaagtggagta
agaaagataattttggccaccaatatcgcagaaacgagcatcacgattaatgatgttgcc
tttgtcatcgactgtggaaaggcaaaagagacgtcctatgatgcattaaacaatactccc
tgtttgcttccttcttggatttccaaggtttcagctcagcagagaagaggacgagccggt
cgtgttcgacctggacagtgttatcatctttacccaaagtgtgtatatgatgcttttgca
gaatatcagttacccgaaattttgaggacgccgttacagtcactttgtctgcaaatcaaa
agcttaaatctcgggagcatatccgagttcttgttaagggcgctgcaatcacccgaacta
ctagcggttcaaaaggccattgaatatctgaagataataggcgcattggatgagaatgaa
tacctcacaactctaggtcgttatttgtccaagcttcccatggagccaaagcttggaaaa
atgctcatactaggggctattcttggttgccttgatcccatattgactgttgtcgctggc
ctgagtgtaagagatcctttcttgacacctcaggacaagaaagatcttgcagacgctgca
aaattccagttttcacgtgatcacagtgatcatcttgcacttgttcgggcttatgagggg
tggaaaaaggctgaggaagagtctgctgtatatgattactgctggaaaaactttctgtca
atacagtcaatgagagctattgattctcttcgaaaagaattcttctcattactcaaagat
actggactcatagatggaaacccatcgatctgcaattcagaggggaatgatgcgaatctt
accagagccgttatttgttatggcatgtatccaggaatctgttcagttgtgcataatgat
agatcattttccttgaagacaatggaggatggccaagttcttctttattcaaattctgta
aatgcacgggaaagaaaaataccatatccgtggttggtattcaacgagaagataaaagtg
aactctgttttcttgagggattcgacagctgtctctgactctactcttatcctctttggc
ggtagcatctccaaaggagacattgatggccacttgaaaatgttgggaggatacttggag
tttttcatgaaacctgttgttgcagagatatgccaaaccttgaagaaagagcttgccgag
ctgatacagaacaaactacttaatcctaaagtggacatgcaagcacaccatgaactctta
tcagctatacgcttgttagtctctggggatggatgtgatgggagatttgtgtttggtcgc
caaatacttaggcctttagaaacatcggctttgtcaacgaactcgacattgctttcaagg
accgaaagtgggccagggggtgacaattccaagagccagctccaaacaatactcactagg
gctggttatgcagcaccgatgtataagactaagcaattgaagaacaacaagttccaaaca
acagtagaatttaatgaaacacagatcatgggacaaccttgcagcaacaagaagagtgct
gagaaagatgcggcagctgaagctattcaatggctgaggggcggggcaaaggaaagtcat
gagcaagtgaaccatatgtcaaacctgctgaagaaaagcaagaaggatcacctctga
DBGET
integrated database retrieval system
