Capsella rubella (pink shepherd's-purse): 17886096
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Entry
17886096 CDS
T02984
Name
(RefSeq) probable pectate lyase 12
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb00040
Pentose and glucuronate interconversions
crb01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
17886096
Enzymes [BR:
crb01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
17886096
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SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
17886096
NCBI-ProteinID:
XP_006290999
UniProt:
R0FN47
LinkDB
All DBs
Position
Unknown
AA seq
487 aa
AA seq
DB search
MMLPRSCIVLFFSFFLFFLPQMGFAMLNNRTVLLTPHPDPELVAYQVQWRVNASITRRQT
LDTTDQAGSNPCFTGNPIDDCWKCDPNWPNNRQSLADCGIGFGQYALGGKGGQFYFVTDS
SDDDAVDPKPGTLRYGVIQEEPLWIVFPSNMMIKLKQELIFNSYKTLDGRGANVHIVGGG
CITLQYVSNIIIHNIHIHHCYQSGNTNVRSSPTHYGFRSKSDGDGISIFGSKDIWIDHCS
LSRCKDGLIDAVMGSTGITISNNFFSHHNEVMLLGHSDHYEPDSGMQVTIAFNHFGEKLI
QRMPRCRRGYIHVVNNDFTQWEMYAIGGSGNPTINSQGNRYTAPTNPFAKEVTKRVETPD
GDWKGWNWRSEGDILVNGAFFVASGEGAEMRYEKAYSVEPKSASFITQITYHSGVLGVGG
RNNNLGMWTTTGSEGTSGLDSYNDYTDEMSGTGSTNRLSFSVLVLSFLLSSISYFVMFTS
TTQMVML
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atgatgcttccaagaagctgcattgtacttttcttctctttttttctcttctttcttcca
caaatgggcttcgccatgctcaacaacagaactgttcttctcactccacaccccgacccg
gaactagtcgcttatcaagttcagtggagagtaaatgcatctataacaagacgtcaaact
cttgacacgacggaccaggctggttcgaacccttgcttcaccggtaacccaatcgatgac
tgttggaaatgtgacccaaactggcccaacaaccgacaaagtctagcagattgtggaatc
gggttcggacagtacgccttgggtggcaaaggtggtcagttttacttcgtcactgattct
tccgacgacgatgccgtcgaccctaaaccgggcactctcagatacggagtgatacaagaa
gagccattgtggatagtgttcccaagcaacatgatgattaaactaaagcaagagctaatc
ttcaatagctacaagacacttgatgggagaggagctaatgttcacatcgttggtggtggc
tgcatcactcttcaatatgtctccaatattatcatccacaacattcatatccaccattgt
taccaatccgggaatactaacgtgcggtcaagtccaacgcactacgggttcaggtctaaa
tcggacggtgacggtatctctatcttcggttcaaaggatatatggatcgaccattgttct
ctgtcgaggtgtaaagacggtctgatcgatgcggtgatgggttccacaggaattactata
tcgaacaacttcttctctcaccataatgaagtcatgcttctcggtcacagcgaccactac
gaaccagacagtggcatgcaggtaacaatcgcgtttaatcactttggagagaaattgata
caaagaatgccgaggtgtagacgtggttatatacacgttgttaacaatgattttactcaa
tgggaaatgtatgccattggcggtagcggtaacccgactattaacagtcagggtaatcgt
tacaccgctccaaccaacccattcgccaaagaggtgactaagagagtggaaacaccggat
ggcgattggaaaggatggaattggagatccgagggggacattttggtgaatggagcgttc
tttgtagcatcaggtgaaggtgcagaaatgaggtacgagaaggcatatagcgtcgagcct
aagtccgcctcgttcatcacccaaatcacatatcactcgggtgttcttggcgtcgggggc
aggaacaacaatcttgggatgtggactactacgggatccgaaggtaccagtggtttggat
tcttataatgactataccgatgaaatgtctggtaccggttcaactaaccggttatctttt
tcagttctggtgttatcattcttgctcagttccatatcatattttgtcatgtttacttct
acaacacaaatggttatgttgtaa
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