Capsella rubella (pink shepherd's-purse): 17886525
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Entry
17886525 CDS
T02984
Name
(RefSeq) probable pectate lyase 6
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb00040
Pentose and glucuronate interconversions
crb01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
17886525
Enzymes [BR:
crb01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
17886525
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Ortholog
Paralog
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Motif
Pfam:
Pectate_lyase_4
Pec_lyase_N
Beta_helix
Motif
Other DBs
NCBI-GeneID:
17886525
NCBI-ProteinID:
XP_006292606
UniProt:
R0H880
LinkDB
All DBs
Position
Unknown
AA seq
455 aa
AA seq
DB search
MVNLGSYVFVFVSLSLAVVVPSVQAHIAVHDEYWTQRQTEALQQTLEAYDPEPLNVTDHF
NHQAALAMVPTGIVNETRRELRQVGRGNKKPRRGRRYESLNAIDKCWRGDKNWDKNRKKL
ADCVLGFGRKTTGGKNGPFYVVTDPSDTDLMNPKPGTLRYAVTRDRPLWIIFARSMIIKL
QQELIITNDKTIDGRGANVHITGGAGLTLQFVRNVIIHNIYIKQIKKGAGGLIRDSEHHF
GLRTVSDGDGINIFGATNVWIDHVSMTDCSDGMIDAIMGSTAITISNSHFTDHDEVMLFG
GTNKDVIDKKMQITVAFNHFGKRLKQRMPRVRYGLVHVVNNDYTHWEMYAIGGNMNPTII
SQGNRFIAPPIEDSKQVTKREYTPYPEWKTWNWQSEKDYFLNGAYFVQSGKANAWSTAPK
NPIPRKFAIRPQPGTKVRRLTKDAGTLGCKPGKSC
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atggtaaatcttgggagctacgttttcgtctttgtctcgttgtctctcgcagtcgtggtt
ccatcggttcaagcccacatcgctgttcatgatgaatactggacgcaacgtcaaaccgaa
gcgttgcaacaaactttggaagcttatgaccctgaacctcttaacgtcacagaccacttt
aaccaccaagccgccttggccatggtgccgacgggtatagtcaacgaaacaaggagggaa
ctccgtcaggtcggacgtggtaataaaaaaccaagacgtggcagaaggtatgaatccctt
aacgcgattgataaatgctggcgaggcgataaaaactgggacaaaaaccggaaaaaacta
gcagattgtgtccttggatttggccgcaaaacaaccggaggcaaaaatggacctttctat
gtagtcactgatccgtcggacaccgatctaatgaacccaaaaccgggaactctaagatac
gccgtgacaagggacagaccactctggatcatattcgcgagaagcatgatcataaaactg
caacaagaactgatcataacgaatgataaaacaatcgacggccggggagcaaatgttcat
ataaccgggggtgcaggtttaacgttgcagtttgtgaggaatgtgatcatacataatatt
tatatcaaacaaattaaaaaaggagctggtgggttgattagagactccgagcatcatttt
gggcttcggacagtgagtgatggtgatgggattaatatttttggtgccacgaatgtttgg
atcgatcatgtctcgatgacagattgttctgatgggatgattgatgcgatcatgggatcg
accgctatcactatttccaattcccattttaccgaccatgacgaggtgatgctgtttggg
ggtacaaacaaggatgtgatcgacaagaaaatgcagataacagttgcgtttaaccatttt
ggtaagagattgaagcaaagaatgccaagggtcagatatggtttggtccatgttgtgaac
aatgactacactcactgggaaatgtatgcaattggtggaaacatgaacccgaccattata
agtcaaggcaatcgtttcattgctcctcctattgaagattccaagcaggttacaaagaga
gagtacacaccttatcctgaatggaaaacatggaactggcaatcagagaaagattatttc
ttgaatggagcttactttgtgcaatcggggaaggcaaacgcgtggagcactgccccgaaa
aacccaatcccaagaaagtttgcaatccggcctcagccaggaacaaaggtcagaagactc
accaaggatgctggtacgcttggctgcaaaccaggcaagtcctgctga
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