Capsella rubella (pink shepherd's-purse): 17887050
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Entry
17887050 CDS
T02984
Name
(RefSeq) long chain base biosynthesis protein 2b
KO
K00654
serine palmitoyltransferase [EC:
2.3.1.50
]
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb00600
Sphingolipid metabolism
crb01100
Metabolic pathways
crb04382
Cornified envelope formation
Module
crb_M00094
Ceramide biosynthesis
crb_M00099
Sphingosine biosynthesis
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09100 Metabolism
09103 Lipid metabolism
00600 Sphingolipid metabolism
17887050
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
17887050
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
crb01007
]
17887050
Enzymes [BR:
crb01000
]
2. Transferases
2.3 Acyltransferases
2.3.1 Transferring groups other than aminoacyl groups
2.3.1.50 serine C-palmitoyltransferase
17887050
Amino acid related enzymes [BR:
crb01007
]
Aminotransferase (transaminase)
Class II
17887050
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Aminotran_1_2
Beta_elim_lyase
DegT_DnrJ_EryC1
Aminotran_5
Cys_Met_Meta_PP
OKR_DC_1
Motif
Other DBs
NCBI-GeneID:
17887050
NCBI-ProteinID:
XP_006290987
UniProt:
R0HFL1
LinkDB
All DBs
Position
Unknown
AA seq
489 aa
AA seq
DB search
MITIPYLTAVSTYFSYGLLFAFGQLRDYSRLIFDWWRTNNLQGYAPICLAHEDFYIRRLY
HRIQDCFGRPISSAPDAWVDVVERVSDDNNKTLKRTTKTSRCLNLGSYNYLGFGSFDEYC
TPRVIESLKKFSASTCSSRVDAGTTSVHAELEECVAKYVGQPAAVVFGMGYATNSAIIPV
LIGKGGLIISDSLNHTSIVNGARGSGATIRVFQHNTPAHLEKVLKEQIAEGQPRTHRPWK
KIIVVVEGIYSMEGEICHLPEIVSICKKYKAYVYLDEAHSIGAIGKTGRGVCELLGVDTA
DVDIMMGTFTKSFGSCGGYIAGSKDLIQYLKYHCPAHLYATSISTPSAQQIISAIKVILG
EDGSNRGAQKLARIRENSNFFRAELQKMGFEVLGDNDSPVMPIMLYNPAKIPAFSRECLR
ENLAVVVVGFPATPLLLARARICISASHSREDLIKALQVISKAGDLTGIKYFPAAPKKQD
QDKNGIKLD
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgattacgatcccataccttacagctgtatcaacgtatttcagctacggcttgctcttc
gcctttggccagcttcgcgattactctcgccttatcttcgattggtggcgcaccaacaat
ctccagggatacgcaccgatctgcttggcgcatgaggatttctacatcagacgattgtat
catcgtattcaggactgttttggacgtcctatatcaagtgcacctgatgcctgggttgat
gtggttgagagagtctctgacgacaacaataagacgcttaagcgaacaacaaagactagc
aggtgccttaatctggggtcctacaattatcttggatttggttcttttgatgaatattgc
acgcctcgtgttatcgagtctttgaagaaattttcagctagtacatgtagctctcgtgtt
gatgcaggaactacatctgtgcatgcagaacttgaggaatgtgttgctaaatatgtggga
caacctgctgctgttgtctttggcatgggttatgcaacaaactcggctatcattcctgtc
ttgattggaaagggagggttgataattagcgattctttgaaccatacttcaattgtcaat
ggtgctcgaggttctggagccactatccgtgttttccaacacaacacacctgctcatttg
gaaaaagtattgaaagaacaaatcgctgagggacaaccgaggacacacagaccgtggaag
aaaattattgttgttgttgagggtatctacagcatggaaggggaaatttgtcatctgccc
gagattgtctcaatttgcaagaagtataaggcatatgtttacttggacgaagctcacagc
attggagcaattggcaagacaggaaggggtgtttgtgaactcctgggagttgacactgct
gatgtagacataatgatgggaactttcacaaaatctttcgggtcttgcggtggctatatt
gccggatccaaggacctcatccaatatttgaagtaccattgccctgctcacctgtacgca
acttcaatttcaactccctccgcacagcaaatcatatcggccataaaagttatccttgga
gaggacggttcaaacagaggtgcacaaaaattagctagaataagggagaacagtaacttt
ttcagggctgagttgcagaagatggggtttgaggttcttggtgacaatgattccccagtc
atgccaataatgctttacaatccagcaaaaatcccagccttctcaagggaatgtttgcga
gaaaacttggcagttgtggtcgtcggtttccctgctacacctctattgctagccagagct
cgtatttgcatatcagcatctcactcaagagaagatctcattaaagccctacaggttata
agcaaagctggtgaccttaccgggatcaaatattttccggcagctccaaagaagcaagac
caagacaaaaatgggataaaattggattaa
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