Capsella rubella (pink shepherd's-purse): 17887139
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Entry
17887139 CDS
T02984
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
17887139
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
crb03041
]
17887139
Enzymes [BR:
crb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
17887139
Spliceosome [BR:
crb03041
]
Complex C
Other components
Step II factors
17887139
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
Cas3-like_C_2
AAA_30
nSTAND3
TsaE
AAA_16
ABC_tran
Sigma54_activ_2
PhoH
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
17887139
NCBI-ProteinID:
XP_006290254
UniProt:
R0FL16
LinkDB
All DBs
Position
Unknown
AA seq
1174 aa
AA seq
DB search
MEKEELNKLNHLSLVSNVCNELETHLGSAEKVLAEFIIDLGRHSETVDEFDKKLKDEGAE
MPDYFVRSLLTVIHAIYPPKPKSEKKKDEGEDVKFKGLAIKDTKDKVKELEKEIEREAEE
RRREEDRNRDRERGRDRRDSGRDRDRDRDRNRDDRRDRHRDRERYRGDEEGEDDRRSDRR
HRERGRGDDEGEDRRRDRRAKDEYVEEDRGGAIANEPELYQVYKGRVTRVMDAGCFVQFD
KFRGKEGLVHVSQMATRRVDKAKDFVKRDMEVYVKVISITNDKYSLSMRDVDQNSGKDLI
PLRKPSDEDDSSRSNPSYRTKDGQVTKTGISGIRIVEENDVAPSRRPLKKMSSPERWEAK
QLIASGVLKVDEFPMYDEDGDGMLYQEEGAEEELEIEMNEDEPAFLQGQTRYSVDMSPVK
IFKNPEGSLSRAAALQSALTKERREMREQQQRTMLDSIPKDLNRPWEDPMPETGERHLAQ
ELRGVGLSAYDMPEWKKDAFGKTPTFGQRSKLSIQEQRESLPIYKLKKELIQAVHDNQVL
VVIGETGSGKTTQVTQYLAEAGYTTKGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGY
AIRFEDCTGPDTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTIHTDVLFGLLKKL
MKRRLDLRLIVTSATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPETDYLDAALITV
LQIHLTEPEGDILVFLTGQEEIDSACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRI
FDPPPPGKRKVVVATNIAEASLTIDGIYYVVDPGFAKQNVYNPKQGLESLVITPISQASA
KQRAGRAGRTGPGKCYRLYTESAYRNEMPPTSIPEIQRINLGMTTLTMKAMGINDLLSFD
FMDPPQPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPLEPPLSKMLLASVDLGCSDE
ILTMIAMIQTGNIFYRPREKQAQADQKRAKFFQPEGDHLTLLAVYEAWKAKNFSGPWCFE
NFIQSRSLRRAQDVRKQLLSIMDKYKLDVVSAGKNFTKIRKAITAGFFFHGARKDPQEGY
RTLVENQPVYIHPSSALFQRQPDWVIYHDLVMTTKEYMREVTVIDPKWLVELAPRFFKVS
DPTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atggagaaagaagagcttaacaaattgaatcatctctctctcgtctccaatgtctgtaac
gagttagaaacccatctaggatctgcggagaaagttttggcagagttcatcatcgatctc
ggtcgtcactctgagactgtagatgaattcgataagaagcttaaggatgaaggtgcggag
atgccggattacttcgtccggtcgttgttaactgtaatccacgcgatttatcctccgaag
cccaagtctgagaagaagaaagatgaaggtgaggatgttaaattcaaaggtttagcgatt
aaggatactaaggataaagttaaggagcttgagaaggagattgaaagagaagctgaggag
cgtcggagagaggaggatcggaatagggatagagagaggggacgggatcggagggattct
ggtagagatagggatagagatagagataggaatcgtgatgatagaagggatcgacatagg
gatagagagagataccgtggagatgaggaaggtgaagatgacagaagaagtgataggagg
catagagaaagaggtcgtggtgatgatgaaggggaagataggcgtagagatagacgtgct
aaggatgagtatgtggaggaagatagaggtggtgcgattgcgaatgagcctgagttgtat
caggtatataaagggagggttactagggttatggatgcgggatgttttgttcagtttgat
aagtttagaggaaaagaaggtcttgttcatgtttctcagatggctactagaagggttgat
aaggctaaggattttgtcaaacgggatatggaggtttatgtgaaagtgatatctattacg
aatgataagtatagtctttctatgagagatgttgatcagaattcgggaaaagatttgatt
cctctgaggaagccttcagatgaagatgattcatccaggagtaatccttcatatagaaca
aaggatggacaagtaacgaagactgggatttctggaatccggattgtggaggagaatgat
gttgcgccttcacgcaggccgttgaagaagatgagctctcctgagagatgggaagcgaag
cagttgattgcttctggtgtcttgaaagttgatgagtttccgatgtatgatgaggatgga
gatgggatgctttatcaagaggaaggtgctgaagaagaacttgagattgagatgaatgaa
gacgaacctgctttcttacaagggcaaactaggtactctgttgacatgtctcctgttaag
atcttcaaaaatcctgagggttcgttgagtcgcgcagctgcacttcagtccgccctcacc
aaggagaggagagaaatgagagaacagcagcaaagaacaatgcttgactctatccccaag
gatctgaatcgtccatgggaagaccctatgcctgaaactggtgaaaggcatctggctcaa
gagcttaggggtgttgggttatcagcttatgacatgcctgagtggaagaaggatgccttt
ggaaaaactccaacttttggacagagatcaaagctttctattcaggaacaaagggagagc
cttccgatttacaagttaaaaaaagagcttatacaggctgtgcatgataatcaagttttg
gtggtcattggtgagactgggtctggaaagacaacacaggtaactcaatatcttgctgaa
gcaggttacacaacaaagggaaagattgggtgtactcagcctcgtagggttgctgctatg
tctgttgctaagagagtagctgaggaatttggttgtcgtttaggagaggaggtagggtat
gcgattcggtttgaggattgtactggaccagacacagtgatcaagtacatgactgatggt
atgcttcttagggagattttgatagatgaaaacctttctcaatattctgtaatcatgctt
gatgaagctcatgagcggacaatccacactgatgtgctgtttggtcttctaaagaagctg
atgaaacgtcgtcttgatcttcgtctgattgtcacgtctgccacgttggatgcagaaaag
ttctctgggtatttcttcaactgcaacatttttaccattcctggaagaacctttcctgtt
gagattttgtataccaaacagccagaaacagattacttggatgcagccctgatcacagtt
ctgcagattcacttgactgaacctgagggtgacattctcgtctttttgacaggacaggaa
gaaattgattctgcatgtcaatctctgtacgagagaatgaaaggtctaggtaaaaatgtt
cctgaacttatcatacttccagtttacagtgcccttcctagtgagatgcagtctagaatt
tttgatcctccccctcctggtaaacggaaagtggttgtagctacaaatattgcagaagct
tcgttaacaatagatggtatatactatgttgttgatcctgggtttgcaaagcagaatgtg
tataatccaaagcaagggctggaatcgctagtcattactccaatttcacaggcatcggca
aagcaaagagctggacgtgctggtcgtactgggcccgggaaatgttaccgtctctacaca
gagagtgcatatcgtaatgagatgcctcctacatcaatccctgaaattcaaagaatcaat
cttggaatgacaactttaaccatgaaagccatgggcattaacgacctgttatcatttgac
ttcatggatccacctcaaccacaagcattgatctctgcaatggaacagttgtacagcctg
ggagctttggatgaggaaggtttgttgacgaagcttggtagaaaaatggcggagtttcct
cttgaaccgccgctctctaaaatgttgctagcaagtgtggatctcgggtgcagcgatgag
attttaacaatgattgctatgatccagacaggcaacatattctatagaccaagggagaag
caagctcaagcagaccaaaaacgggcaaagtttttccagcctgaaggtgatcacttgaca
ttgctggctgtatatgaggcttggaaggcaaaaaacttttcaggtccatggtgttttgaa
aacttcatacagtcaagatcgttacgacgtgctcaagacgtaaggaaacaacttctcagc
attatggacaaatataaactagatgtggtaagtgcggggaagaatttcacgaagataagg
aaagcaataacggcaggcttcttcttccatggagcaagaaaagatccacaagaaggttac
aggacactggtggagaatcaaccggtgtatattcacccgagcagcgcgctgttccagaga
caaccagactgggttatatatcacgatcttgtgatgacgaccaaagagtacatgagggaa
gtaacagtgattgacccaaagtggcttgttgagttagctccaagattcttcaaagtctct
gacccaacgaaaatgagcaagcgcaagcgccaagaacggattgagcctttgtatgaccgt
taccacgagcctaactcatggcgtctcagcaaaagacgtgcttga
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integrated database retrieval system
