Capsella rubella (pink shepherd's-purse): 17887342
Help
Entry
17887342 CDS
T02984
Name
(RefSeq) LOW QUALITY PROTEIN: endoribonuclease Dicer homolog 3
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
crb
Capsella rubella (pink shepherd's-purse)
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
crb03036
]
17887342
Chromosome and associated proteins [BR:
crb03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
17887342
microRNA pathway
RISC loading complex
17887342
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
DEAD
PAZ
ResIII
DND1_DSRM
Motif
Other DBs
NCBI-GeneID:
17887342
NCBI-ProteinID:
XP_006293319
UniProt:
R0FTL7
LinkDB
All DBs
Position
Unknown
AA seq
1507 aa
AA seq
DB search
MERNVIAVLETGADKSEIIKMLTKAMGSSDKAKRLIIFLAPTVNLVKQQCCEIRTNVNLM
VEDYFGAKGVDKWTSQRWEEEVNKYDVLVMTPQILLDALRSAFLKLEMVCLIIIDECHRT
TGNHPYAKLMKEFYHESTNKPKIFGLTASAVIRKDQLSELERLMDSKIFNPEERNEVEKF
ATAVKEGPIFYDPPSSCSLELKEKLETSHYKFDASLRRLQELEKGTFLNMENKFETFQKR
LSINYREIVHCLDNLGLICAHLAAEICLEKISDTKEESESYKEYSMVCKEFLEDILSTIG
VYLQQEDKKLVDLQQNHLSAVNSGHVSPKLKELFHLVDSFRGEKQXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXYINVLYLIGNNSSTDASAQKTHIKIPDSFHVDKVNLIFIKDG
VEEGFQVPNCSWMVCFDSHSQEHAKQSNHKSIIFLERGNPKQRDHSYDLKRKEVPIRDPE
APNLQSCPPPVRSGHGLQETGAMVVPNSNRTVSEEAAATQTMIDPPSRNELLACKKLRSD
NNILESSAKVNVASSKSKASSSAAGSKKRKELHGTTCAKALSGTWEKNIDGAIFQAYKFD
FCCNISGEAYSSFSLLLESTLAEDVGKVEMDLYLVRKLVKASVSPCGQIRLSQDEMVKAK
CFQQFFFNGMFGNLFVGSKSLGTKREFLLQTDTSSLWHPSFMFLLLPVETKDLASSATID
WSAINSCASIVEFLKRYSLLDLRVSDENKCNKSSGEEVLLGDKKEEANLXXXXXXSSDKN
SLEELVVIAIHTGRIYSIVEAVTASSAMSPFEGDVSSEYATYVEYFNKKYGIVLAHPNQP
LMKLKQSHHAHNLLVDFNEEMVVKTEPKAGTVRKKKPNIHAHLPPELLVRIDVPRAVVKS
IYLLPSVMYRLESLMLASQLREEIDCSINNFSISSTSILQALTTLTCPEAFSMERLELLG
DSVLKYVVSCYLFLKYPDKDEGQLSRQRQSIISNSNLHSVATNRKLQGYIRNGAFEPRRW
TAPGQVSLFPVPCKCGVETREVPLDPKFFTENMTIKIGKACDMGHRWTVSKSVSDCAEAL
IGAYYVSGGLTASLHMMKWLGVDVDFDQNLVIEAINRASLRCYIPKDNELTELERKIQHE
FSAKFLLKEAITHSSVHESYSYERLEFLGDSVLDFLITRHLFNTYEQTGPGEMTDLRSAC
VNNENFAQVAVKNNLHSHLQRRATVLETQINEYLMSFPKPDETGRSIPSIQGPKALGDLV
ESIAGALLIDTRLDLDQVWRIFEPMLSPLVTPDKLQLPPYRELNELCDSLGYFFRVKCSN
DGVKAQATIQLQLDDVLLTGDGSEQTNKLALGKAALHLLRQLEKRNISRKTSIGDNQSSM
AVNLDGETPAPDSNEIQSIVIPVIGPINMKKGGPRGTLHEFCKKYLWPMPTFDTSEEKSR
TPFEFTDSGEKRTSFSSFISTITLRIPNREAVMYAGEARPDKKSSFDSAVVELLYELERR
KILTIQK
NT seq
4524 nt
NT seq
+upstream
nt +downstream
nt
atggaaaggaacgtaattgctgtactagagacaggagctgataagtcagagatcattaag
atgcttaccaaagcaatgggttcttctgataaagccaaaagattgataattttcttggcc
ccaactgtaaatcttgtcaaacagcaatgctgtgagatcagaacaaatgtgaatttgatg
gttgaagattactttggagctaaaggagtggataaatggacatcccaacgttgggaagag
gaagttaacaagtatgatgttcttgttatgactcctcaaatattattggatgcccttaga
agtgcattcctgaaactagagatggtatgtcttataataatagatgaatgccaccgcacc
actggtaatcatccctatgcgaagttaatgaaggaattctaccacgaatccactaacaaa
ccgaagatatttggattgactgcgtcagccgtcattagaaaggatcagttatcagaactt
gagagactcatggactcgaagatttttaatcctgaagagcggaatgaggtggaaaaattt
gctacagcagtaaaagagggtccaattttttatgacccaccatcatcctgtagtttggaa
ttgaaagaaaagttggaaacttcacactacaagtttgatgcttctcttagaaggcttcaa
gagttggaaaaaggcacttttctcaacatggagaataagtttgagacgtttcagaagcga
ctgtccatcaactacagagagattgtgcattgtctcgataatcttggcctgatttgtgcg
cacttggcagctgaaatctgcttggagaaaatctcagacacgaaagaggaaagtgaaagt
tataaagaatactcaatggtttgcaaggaatttcttgaggatattttatccacaattggg
gtgtatttgcagcaagaagataagaaattggtagatttgcagcaaaaccatctgtcagca
gtaaattccggacatgtatctccaaagttgaaagagctcttccatctagtagattcattt
aggggtgaaaagcaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatatt
aatgttctgtatttaatcggaaacaactcctccaccgatgcatcagcacagaaaacacat
attaaaatccctgattcatttcatgttgacaaggtgaatcttatatttatcaaagatggg
gttgaagagggatttcaggttccaaattgctcatggatggtttgctttgactcgcattct
caagaacatgccaaacagagtaatcataagtctatcatatttctcgaaagggggaaccca
aaacaaagagaccattcttatgatctcaagcgaaaagaagtcccaattcgagatcctgaa
gctccaaatttacaatcgtgtccacctccagtgagaagtggacatggcctgcaggagact
ggggcaatggttgttccgaattctaatagaactgtatctgaggaagcagctgccacacag
actatgattgatcctcctagcagaaatgagctattagcatgtaagaagttacgatcggat
aacaatattttagagtccagtgccaaagtgaacgttgcctcttctaaaagtaaagcatct
tcatcggctgcaggttcaaaaaaacgtaaggagctgcatgggacaacctgtgcaaaagca
ttgtcaggaacctgggaaaaaaatattgatggtgccatctttcaggcttataagtttgac
ttctgttgtaatatttctggggaagcatactcgagtttctctcttttgcttgagtcaacc
ctagctgaggatgttggtaaagttgagatggacctttacttggtcaggaagcttgtgaaa
gcttccgtctcaccttgtggccagatacgtttgagtcaagatgagatggtcaaagcaaag
tgttttcagcagtttttctttaatggcatgtttggaaacttatttgttggatctaagtca
ctgggaacaaagagagaatttttgcttcaaaccgatacaagttctctttggcacccttcc
tttatgtttctactgctaccagttgaaacaaaggatctagcttcgagtgcaacaattgat
tggtcagctatcaactcctgtgcctcgatagttgagttcttgaagagatattctcttctt
gatcttcgggttagtgatgagaataagtgcaacaaatcatccggtgaggaagtcttactc
ggcgacaaaaaggaagaagcgaatctnnnnnnnnnnnnnnnnnnttcgtctgacaaaaat
agtctcgaagaacttgtggtcattgcaattcatactggaaggatatactctatagtcgaa
gcggtaacggcttcttctgctatgagcccatttgagggtgacgtctcatcagaatatgct
acttatgtagaatattttaacaaaaagtatgggattgttttggcgcacccgaaccagcca
ttgatgaagttgaagcagagtcaccatgcacacaaccttttagtcgacttcaatgaagag
atggttgtgaagacagaaccaaaagctggcactgttaggaagaaaaaaccaaatatccat
gcgcatttgcctccagagcttttggtcagaattgatgtacctcgtgctgtggtaaaatca
atctacttgctgccctcagtgatgtaccgcctagagtctttaatgttggccagccagctt
agggaagagattgattgtagcattaataacttcagtatatcaagtacatcgattcttcaa
gcacttacaacacttacatgccccgaagcgttttccatggagcgattggaactgcttggg
gattcagtcttgaagtatgttgtgagctgctatctattccttaagtatcctgacaaagat
gaaggacaactatcacggcagaggcaatcgattatatctaactcaaatcttcattccgtg
gcaaccaatcgaaaactacagggatacataagaaatggcgcatttgaacctcgtcgctgg
actgcacctggtcaagtttctctttttccagttccttgcaaatgtggggtagaaactaga
gaagtaccattggacccaaaattcttcacagaaaacatgactatcaaaatcgggaaggct
tgcgacatgggtcatagatggacagtttcaaaatctgtatcagattgtgctgaggccctg
attggtgcctattatgtaagcggtggattgactgcttctctccatatgatgaaatggctc
ggtgttgatgtcgattttgaccaaaacctagtcattgaagccatcaatagagcttctcta
cggtgttacatacctaaagacaatgagctcacagagttggagagaaagatccaacatgaa
ttctctgccaagttccttttaaaagaggctatcacacattcctctgttcatgaatcctat
tcatacgagaggttggagtttcttggcgattctgtactggattttctaatcacccgtcac
ctttttaatacctacgaacaaactgggcctggagagatgaccgatcttcgttctgcatgt
gtaaataatgaaaattttgcacaagttgcagtgaaaaataatctgcatagccaccttcaa
cgtcgtgctacggttcttgagacacaaataaacgagtatctgatgtcctttccaaagcca
gatgagactggtagatcaatcccttcaatacaagggcctaaggctcttggagacttggtg
gagagtatcgctggagcattgctgatcgatacaaggttagatcttgatcaagtgtggaga
atctttgagccgatgctttctccacttgttactccagataaacttcagctacctccatac
cgagagctcaatgagctatgcgactctcttgggtatttcttccgagtgaaatgttcaaat
gatggtgtcaaagcacaagccacgatccagttgcagctggatgatgttcttctaactgga
gatggatctgaacagacaaataaactggccttgggaaaagcagctttgcatctgcttagg
caacttgagaagagaaacatttcacgtaaaacttcaatcggggataatcaaagttccatg
gctgttaatcttgacggagaaactccggctccagattctaacgaaatccagagtatagtg
attccagttattggacctataaacatgaagaaaggtgggcctcgtggaactctacatgag
ttctgcaagaagtatctctggccaatgcctactttcgacacctcggaagagaaatcgcga
actccgtttgaattcactgatagcggtgagaagcggactagcttcagcagtttcatatca
accataacgctacggatacccaatcgtgaggctgtgatgtatgccggagaagctaggcct
gacaagaagagttcttttgactctgcagtcgtggaactgctctatgagcttgagcgccgc
aagatacttaccatacaaaagtaa
DBGET
integrated database retrieval system
