Capsella rubella (pink shepherd's-purse): 17887442
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Entry
17887442 CDS
T02984
Name
(RefSeq) putative pectate lyase 11 isoform X1
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb00040
Pentose and glucuronate interconversions
crb01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
17887442
Enzymes [BR:
crb01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
17887442
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SSDB
Ortholog
Paralog
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
17887442
NCBI-ProteinID:
XP_006291220
UniProt:
R0HJS2
LinkDB
All DBs
Position
Unknown
AA seq
411 aa
AA seq
DB search
MSSYSNTAYALLLLLSILNTVAFSSSSSVTHVQDPNLVVDEVNRSVFNASRRSLSYLSCR
TGNPIDDCWRCDPNWETNRQRLADCAIGFGKNAMGGRGGRFYVVTDPSNDDPVNPRPGTL
RHAVTQEEPLWIIFKRDMVIRLKKELIISSFKTIDGRGSSVHITNGPCLKIHYANNIIIH
GINIHDCKPGPGGMIRDGPRHTGYWMPSDGDAVAIFGGKHVWIDHCSLSNCDDGLIDAIH
GSTAITISNNHMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHV
VNNDYTHWEMYAIGGSASPTIYSQGNRFLAPNTRFNKEVTKHEDAPESQWRDWNWRSEGD
MLLNGAYFRESGAEAPSTYARASSLSARPSSLVGSITTTAGTLGCRRGRPC
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcgtattctaatacagcttacgctcttctacttcttctatcaatcttgaacacg
gttgcattttcttcgagttcgtcggtgacgcatgttcaagatccaaatctagtagttgat
gaagttaacagaagtgtattcaatgcatcaaggaggagtttgtcctacctatcttgcaga
acaggaaatcctatcgacgattgttggcggtgtgacccgaattgggaaacaaaccgccaa
cggttagccgattgcgccatcggatttggcaaaaatgctatgggagggcgcggtggacga
ttctacgtagttacggatccgtccaacgatgatcctgtgaaccctagacctggaacgctg
agacatgcggtcacacaagaagaaccattatggatcattttcaagagagatatggtcatt
aggcttaaaaaagaacttatcatctcatctttcaagaccattgatggtagaggctcgagt
gttcacattaccaatggaccatgcttaaagatccattacgcaaacaacatcatcattcat
ggcattaacatccatgattgcaaaccaggaccaggtggcatgattagagatggtccacgt
cacaccggatattggatgccatccgatggagacgcggtggcgatatttggagggaaacac
gtgtggattgaccattgctcgttgtctaactgcgacgatggactcatagacgctatacat
ggttcgacggctataaccatatcgaacaaccacatgactcaccacgacaaggtcatgctt
ttaggacatagtgatagttacactcaggacaagaatatgcaagtcacaattgcgtttaac
catttcggagaaggacttgtacaaaggatgccacgatgcaggcatggatatttccatgta
gtgaacaatgattatactcattgggaaatgtatgcaattggaggaagtgcttctccaact
atatacagccaagggaatagatttctcgccccaaacactcgatttaataaagaggttact
aaacatgaggatgcaccggagagccaatggagagattggaactggagatcggaaggtgat
atgttgttgaacggagcttatttccgggagtcgggtgccgaagcaccttcgacttatgca
agagcttcgagtcttagcgcgaggccatcgtcgcttgtgggttctatcacgacgacggca
ggcactttaggctgtcgtcgcggccgtccgtgttaa
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