Capsella rubella (pink shepherd's-purse): 17887468
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Entry
17887468 CDS
T02984
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 38
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb03013
Nucleocytoplasmic transport
crb03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
17887468
03015 mRNA surveillance pathway
17887468
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crb03019
]
17887468
Enzymes [BR:
crb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
17887468
Messenger RNA biogenesis [BR:
crb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
17887468
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
17887468
NCBI-ProteinID:
XP_006290971
UniProt:
R0H3M0
LinkDB
All DBs
Position
Unknown
AA seq
493 aa
AA seq
DB search
MADTVEKVPTVESSTSSSVEAPITAEKTEPTTEKTKWGDVEDDDEEEAVSELNSLTIKEE
EKLDSVLEEPEDSNIKAVTSGDTPYTSASRFEDLNLSPELMKGLYVEMKFEKPSKIQAIS
LPMIMTPPHKHLIAQAHNGSGKTTCFVLGMLSRVDPTLHQPQALCICPTRELANQNMDVL
QRMGKFTGITAELAVPETRGGAPAPRRAAVTAHVVIGTPGTLKRWMSFKKLGLDHLKILV
FDEADHMLATDGFRDDSLKIMKDIGRVNPNFQVLLFSATFNETVKDFVARTVKDPNQLFV
KREDLALDSVKQFKVLCPKEQNKIEVIKDQIMELGDIGQTIIFVKTKVSANKVHKALAEM
GYDVTSVHGSMSEVDRDKIVKEFKDCLTQVLIATDVIARGFDQQRVNLVVNYNLPTKYET
GEPDYEVYLHRVGRAGRFGRKGAVFNLLLDDGWDKEVMEKIEKYFGANVKEIKSWNSEDE
YKGALKEAGLLDE
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
atggcggatactgtagagaaagttcccaccgttgagtcatcaacttcctcctccgtggaa
gcacctattaccgccgagaagactgagcccacgacggagaagacaaaatggggagatgtt
gaggatgatgatgaagaggaagcagtatcggaactcaattctctgaccattaaggaggaa
gagaaacttgattctgtgcttgaagaacctgaagattcaaacatcaaagcggttacttct
ggtgatacaccatatacatcagcaagcaggtttgaggatttgaacttatctccggagttg
atgaaaggcttatacgtggagatgaaattcgaaaagcctagcaagattcaagctatcagt
ttgcccatgattatgacgccgcctcacaagcatctcattgctcaggcgcataacggatct
ggaaagacgacttgtttcgttcttgggatgttgagtcgggttgatccgacactgcaccag
cctcaggcgctctgcatttgtcccactagagaattagctaatcagaatatggacgttctt
cagaggatggggaagtttactgggatcactgctgaattggctgtgccagagacaagagga
ggtgcaccggccccgagacgagctgctgttactgctcatgtggtgattggtacacctgga
acgcttaagaggtggatgtcatttaagaaacttggtctcgatcatttgaagattcttgtt
tttgatgaggctgaccatatgcttgctacggatggctttagagatgattccttgaagata
atgaaagacattgggagagttaatcccaatttccaggttctacttttctcggcaactttt
aatgaaactgtcaaagattttgtggcaaggacagtcaaggatcctaatcaattgtttgtc
aaaagagaggatctggctttggactcggtaaagcagtttaaagttctttgcccgaaggag
caaaacaagatcgaagtcattaaggatcagattatggaacttggggatattgggcaaacc
attatctttgtgaaaacaaaagtgtctgctaacaaggtccacaaagcccttgcagaaatg
ggatatgatgtcaccagtgtccatggtagtatgtctgaagtggacagggataagatagtt
aaggagttcaaagactgccttactcaagtgctaattgctactgatgtcattgcaagaggt
tttgaccaacagcgggtgaatttggttgtcaattacaatcttcccaccaaatatgagacc
ggagagccagattatgaggtgtaccttcacagggttgggagagctggccggtttggtcgt
aaaggagcggtatttaacctgctgttagacgatgggtgggataaagaggtgatggagaag
atcgagaagtattttggagcaaatgttaaggagatcaagtcgtggaactcagaggacgaa
tacaagggtgcgttaaaggaagctggcctgctcgacgagtga
DBGET
integrated database retrieval system
