Capsella rubella (pink shepherd's-purse): 17887550
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Entry
17887550 CDS
T02984
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 12
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
17887550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crb03019
]
17887550
03036 Chromosome and associated proteins [BR:
crb03036
]
17887550
Enzymes [BR:
crb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
17887550
Messenger RNA biogenesis [BR:
crb03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
17887550
mRNA degradation factors
5'-3' decay
Decapping complex
17887550
Chromosome and associated proteins [BR:
crb03036
]
Eukaryotic type
Gene silencing
piRNA pathway
17887550
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
Motif
Other DBs
NCBI-GeneID:
17887550
NCBI-ProteinID:
XP_006290970
UniProt:
R0HJ57
LinkDB
All DBs
Position
Unknown
AA seq
494 aa
AA seq
DB search
MNNRGRYPPGVGTGRGAPPNPDYHQSYRQQQPQDQQYVQRGYPQNPQQMQLQQQQQHQQQ
QWSRRPQLPGNASNANELQKTSQSEASSGDPNGQDWKATLRLPPPDTRYQTADVTATKGN
EFEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLE
KIDPNNNVIQAMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQPVH
LLVGTPGRILDLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELIQFLPQNRQFLMFS
ATFPVTVKAFKDRHLRKPYVINLMDQLTLMGVTQYYAFVEERQKVHCLNTLFSKLQINQS
IIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHEFRNGACRNLVCTDLFTRG
IDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLVTYEDRFKMYQTEQELGTEI
KPIPSNIDQAIYCQ
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atgaataacagaggaaggtatccaccgggggttggaaccggacgtggtgcgccgccgaat
ccagattatcatcagtcttatcggcagcaacaacctcaagatcagcagtatgttcagcgc
ggctatccgcagaaccctcagcagatgcaactgcaacaacaacaacaacatcaacagcaa
cagtggtcaagacgccctcagcttcctggaaacgccagtaacgctaatgagcttcagaag
acgtctcagtccgaagctagcagcggcgaccctaatggccaagattggaaggcaacttta
aggctcccacctcctgacacacgttatcagacagcggatgtgacagctacgaaaggaaat
gaattcgaagattactttctgaaaagagatctgttaaaaggaatatatgagaagggtttt
gagaagccatctccaattcaagaagagagcattccaattgctttaactggtagtgatatt
cttgctagagccaaaaacggtacaggaaagactggtgccttctgcattccagttcttgag
aaaatcgatccaaataacaatgtgattcaagccatgattctagtcccaacgcgagaactg
gcccttcagacatcacaggtttgcaaggagctttccaaatatttgaatatccaggtaatg
gtcaccactggcggtaccagtctgagagatgatatcatgcgactacatcaacctgtacat
ctgctggttggaactccgggaagaatattggatcttacaaaaaagggtgtgtgtgttttg
aaagactgtgcaatgcttgtcatggatgaggccgacaagcttctgtctgcagaattccaa
ccttctctagaggaattgatacagtttctaccacaaaatcgtcaatttttgatgttttcc
gccacatttcctgtcactgtcaaggcttttaaggatcgacatctccggaaaccctatgtt
atcaatctcatggatcaactcacgcttatgggtgtcacacaatattatgcctttgttgaa
gaaagacagaaggttcactgcctcaacacacttttctctaagctgcaaataaatcaatcg
ataatcttttgcaactctgtcaatcgagtggagctattggctaagaaaattacagaactt
ggttattcatgcttctacattcatgcgaagatggttcaagaccatagaaacagagttttc
cacgagttccgcaatggtgcttgcaggaatctcgtttgcactgatctgtttactcgtgga
atagacattcaagctgtgaatgtagtgatcaactttgattttcctaggacttctgagtcg
tatctacacagggtaggccgatcaggacggtttggacacctaggattggctgtgaatctg
gtaacatacgaggaccgcttcaaaatgtatcagactgagcaagaacttgggactgaaatc
aagccaattccatctaatatcgatcaggcaatctactgtcagtaa
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