Capsella rubella (pink shepherd's-purse): 17887625
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Entry
17887625 CDS
T02984
Name
(RefSeq) probable cyclic nucleotide-gated ion channel 6
KO
K05391
cyclic nucleotide gated channel, plant
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb04626
Plant-pathogen interaction
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09150 Organismal Systems
09159 Environmental adaptation
04626 Plant-pathogen interaction
17887625
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
crb04040
]
17887625
Ion channels [BR:
crb04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
17887625
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Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
cNMP_binding
IQ
Ion_trans_2
Motif
Other DBs
NCBI-GeneID:
17887625
NCBI-ProteinID:
XP_006293366
UniProt:
R0HA32
LinkDB
All DBs
Position
Unknown
AA seq
745 aa
AA seq
DB search
MFDTCGSKRVKSQVISGQLEKFVRLDSMDSRYSQGSEAGLNKCTLNIQGPKRFAQGSKTS
SGSFKKGFRKGSEGLWSIGRSIGLGVSRAVFPEDLEVSEKKIFDPQDKFLLLCNKLFVAS
CILAVSVDPLFLYLPFINDKAKCVGIDRKLAIIATTIRTVIDSFYLFHMALRFRTAYVAP
SSRVFGRGELVIDPAQIAKRYLQQYFIIDLLSVLPVPQIVVWRFLINSKGANVLATKQAL
RYIVLVQYIPRFLRMYPLSSELKRTAGVFAETAWAGAAYYLLLYMLASHIVGALWYLLAL
ERNNDCWSKACHDNTTCARNFLFCGNQNMPGYAAWDKIKDSVLQAHCPVNVPEDEEPPFD
FGIYLRALSSGIVANKNFVSKYFFCLWWGLQNLSTLGQGLETSTYPGEVIFSITLAIAGL
LLFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRMLPPELRERVRRYDQYKWLETR
GVDEENLVQNLPKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLFTEKSYL
VREGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCGDELLTWALDPKSGSNLP
SSTRTVKALTEVEAFALIADELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAW
RRYTKRKKLEQLRKEEEEEEESASVIAGGSPYSIRATFLASKFAANALRSVHKNRTAKSA
LLSSTKELVKFQKPPEPDFSAEDHH
NT seq
2238 nt
NT seq
+upstream
nt +downstream
nt
atgttcgatacttgtggttcaaaaagagtcaaatctcaagtcatcagtggccaactcgag
aagtttgtcaggttagatagtatggactcgaggtactcacaaggctctgaagcgggttta
aacaaatgcacattgaatatacaaggacctaaacgttttgctcaaggaagcaaaacatca
tctggatcttttaagaaagggtttagaaaaggttcagaagggctttggtctataggtaga
tcgattgggctcggggtttcgcgtgctgtatttcccgaagatcttgaagtatctgagaag
aagatatttgatcctcaagacaagtttcttttgctctgcaacaagttgtttgtggcttct
tgtatactcgcagtatccgtggatccgctcttcttgtatcttccttttataaacgataaa
gcgaaatgcgttgggattgatcggaaactggcgattatagcgactacgataaggacagtt
atagattcgttttatctctttcatatggctctacggtttagaacagcttatgttgctccc
tcatcgcgggtttttggtcgaggcgagcttgttatagaccctgcacagatagctaaacgg
tatctgcaacagtacttcatcatcgatttgctttccgtgcttcctgttccacagattgta
gtttggagatttcttatcaattcaaaaggtgcaaatgtgttagcaactaaacaagcactt
cgatatatcgtgttagttcaatatattccacgttttcttcgaatgtatcctttaagttca
gaattgaagagaacagccggcgtgtttgctgaaactgcttgggctggtgcagcttattac
ttgctactttacatgctcgcaagtcatattgttggggctttgtggtatttgcttgcctta
gaacgcaataacgactgctggagtaaggcttgccacgataacacgacatgtgcaagaaac
ttcttgttttgtggtaaccaaaatatgccaggttatgctgcttgggacaagattaaagat
tcggttcttcaggctcattgccctgttaatgtccctgaggatgaagaacctccctttgat
tttggaatctacttaagagctctctcctctggcatcgttgcaaataagaactttgtctct
aagtacttcttctgtttgtggtgggggttacagaatcttagtacacttggtcaagggctt
gaaactagtacataccctggagaagttatattctctataacacttgctattgctggactt
ctactctttgcccttctcattggaaacatgcagacgtatcttcaatcgctcaccatccgg
ttagaagaaatgcgagtcaaaagacgcgactcagaacagtggatgcatcatcgaatgctt
ccaccagaactgcgggaacgggtcagacgatatgatcaatacaagtggttggagactcgt
ggagttgatgaagagaatcttgttcagaacctccccaaggatcttagaagagatatcaaa
cgtcatctctgtcttgccttagtcagaagagttccattgtttgagaatatggatgagagg
ctgttagatgcaatctgtgagaggcttaagccatgtctattcactgagaagtcttactta
gttcgtgagggagatccagtcaatgagatgctcttcataatccgtggtaggctcgagagt
gtaactactgatggcgggagaagcggtttctacaaccgcagtttacttaaagaaggagat
ttctgcggtgacgaacttttgacatgggcacttgatcccaaatccggttctaacctccca
tcatcaacaagaaccgtcaaggccttaaccgaagtagaagcttttgctttgatagccgat
gagctgaaattcgtggcgagccagttcaggagactccatagcagacaagtgcaacacact
ttcagattctattcacagcaatggaggacatgggccgcttgcttcatccaagctgcatgg
cgacggtacacaaagaggaagaaactggagcaacttagaaaagaagaggaagaagaagaa
gagtcagcatcggttatagccggaggaagtccttatagcataagagcaacattcttggct
tcaaagtttgcggcaaatgcacttcgtagcgttcacaagaaccggactgcgaaatctgca
ttgttgtcatctactaaagaattggtgaagtttcagaaacctccagaaccagatttctca
gctgaagatcatcattga
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