Capsella rubella (pink shepherd's-purse): 17887818
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Entry
17887818 CDS
T02984
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH13
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
17887818
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
crb03041
]
17887818
Enzymes [BR:
crb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
17887818
Spliceosome [BR:
crb03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
17887818
Complex C
U5 SnRNP specific factors
17887818
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sec63
SNRNP200_wHTH
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_11
Motif
Other DBs
NCBI-GeneID:
17887818
NCBI-ProteinID:
XP_006295588
UniProt:
R0G054
LinkDB
All DBs
Position
Unknown
AA seq
2176 aa
AA seq
DB search
MASSGGGGAEEQARLKQYGYKANSSLVLNSDEGRRDMHQPSGEPESLRGRINPKSFGDRV
AKGKPHEVYERLNKSKKKKKERDVAVVSLRESKRRRLREVSVLTDTDDGVYLPKTKETRA
AFEIMLTLIQQQLGGQPLDIVCGAADEILAILKNDSVKCHEKKIEIEKLLNVISNHVFNQ
FVSIGKLITDYQDCGDSLSGKACDDQGLDYDDVGVALEFKEDDEESDLDMVQEEHEEEDE
DAVEPNETGGDQVGVATNGKDTRHAKEGTSLNVQDIDAYWLQRKISQEYGQKMDAQECHK
LAQELLNILAEGNDRDVEIKLLEQLQFEKFNLAKFLLQNRLKVVWCTRLARARDQNERNH
IEEKMMGLGPELAAIVEELHVKRATAKEREEKREKDIKEEALHLMDDDSGGDGYRSMRDV
DVDSDIENGWLKSQRRVLDLESLAFNQGGFMRENKKCELPDRSCRIRGKEYDEVHVPWVS
KKFDSNEKLVKISEMPDWAQPAFRGMQQLNRVQSKVYGTALFKAENILLCAPTGAGKTNV
AVLTILHQLALNMNPDGTFNHGNYKIIYVAPMKALVTEVVDNLSERLKDYGVTVKELSGD
QSLSGHEIKETQIIVTTPEKWDIVTRKSGDRTYTQLVRLIIIDEIHLLNDNRGPVVESIV
ARTLRQIETTKEHIRLVGLSATLPNDEDVALFLRVDLKNGLFKFDRSYRPVPLEQQYIGI
NVKKPWRRFQLMNDICYQKVLAGAGKHQVLIFVHSRKETAKTARAIRDTAMANNTLSRFL
KEDSQSYEILQSQVALLKNTDLKELMPYGFAIHHAGLTLGDRHIVEKQFRLGNLQVLVST
ATLAWGVNLPAHTVIIKGTQVYNPERGAWMELSPLDVMQMIGRAGRPQYDQRGEGIIITG
YSELQYYLRLMNEQLPIESQFISKLADQLNAEIVLGTVQNAREACHWLGYTYLYIRMVRN
PTLYGLPPDALAKDLLLEEKRADLIHSAATILDKNNLIKYDKKSGFFQVTDLGRIASYYY
ITHGTIATYNENLKPTMTDIDLFRLFSLSEEFKYVTVRQDEKMELAKLMERVPIPVKETL
EDPNAKINVLLQVYISKLNLEGLSLTSDMVYITQSAGRLLRAIFEIVLKRGWAQLSEKAL
SLSKMVGKRMWSVQTPLRQFHQISEEILTKLEKNDMVWERYYDLSSHELGELIRNPKMGR
QLHKFVHQFPKLNLRAHVQPISRSVLQVELTVTPDFQWNDKLHQYDEPFWIILEDNDGEK
IFHYEYFLLKKLYIDKDHTLNFTVPISEPVPPQYFIRVVSDKWLDSPTVFPISFRYLILP
EKYPPPTELLDLQPLPVMALRNPSYESLYQDFKHFNPVQTQVFTVLYNTSDNVLVAAPTG
SGKTICAEFAILRNHLEVPESTMRVVYIAPLEAIAKERFCDWERKFGKGLGLPVVMLTGE
TALDLTLLEKGQIIISTPEKWDALSRRWKKRKYIQHVSLFIVDELHLIGGQGGPVLEVIV
SRMRYISSQVGNKMRIVALSTSVANAKDLGEWVGASSCGLFNFPPNIRPVPLEIHIQGVD
ILSFEARVQAMTKPTYTAIVQHAKNKKPAIVFVPTRKHVRITAVDLIAYSHVDNMQSPEF
LLGKLEELEPFVSQICEETLKETLRHGVGYLHEGLSSTDQEIVTQLFEAGRIQVCVMSSS
LCWGTPLKAHLIVVMGTQLYDGRENSHPDYPISDLLQMMGRGSRPLLDDAGKCVIFCHAS
RKEYYKKYLYEAIPVESHFQHFLHDNFNAEVDAGVIENKQNAVDYLTWSFMYRRLPQNPN
YYNLQGVTHRHLSDHLSELVENTLSDLEVSKCIEIENELDLSPLNLGIIASYYYINYTTI
ERFSSLLASKTKMKGLIEILTSASEYDLTPIRPGEEDAVRRLINHQRFSFDNPICTDPHV
KANALLQAHFSRQNLSGNLAMDQHEVLLSATRLLQAMVDVISNNGCLNLALLAMEVSQMV
TQGMWDRDSILLQLPHFTKDLAKRCQENPGNNIETVYDLLEMEDNKRQELLQMSDAQLLD
IARFCNRFPNIDLTYEIVGSNEVSPGKEITLQVMLERDMEGRTEVGPVNAPRYPKTKEEG
WWLVVGEIKTNQLMAIKKISLQRKAKVKLEFAVPTEPGEKSYTLYFMCDSYFGCDQEYSF
TVDVKDSDAKDDHMEE
NT seq
6531 nt
NT seq
+upstream
nt +downstream
nt
atggcgagttcgggtggcggtggtgcggaggaacaagcgaggttgaagcagtacgggtac
aaagccaattccagtctggttcttaacagcgatgagggtcgtcgtgatatgcatcaacct
tctggagaaccagagagcctgagaggaaggattaatcctaagtccttcggagatcgcgtt
gctaaggggaagcctcatgaggtatatgagaggctgaacaaatcgaagaagaagaagaag
gagcgtgatgttgctgtggtatctcttcgtgagagcaagagacgtcgtctcagggaggtg
agcgtgcttactgatacagatgatggcgtttatttgcccaagactaaggagacgagggct
gcttttgagatcatgcttactcttattcagcagcaattgggtgggcagcctctggatatt
gtttgtggtgcggctgatgagattttggctattctcaagaacgattccgtcaaatgccat
gaaaaaaagatagagattgagaaactgctaaacgttatttctaatcatgttttcaatcag
tttgtttcgattggaaaactgattacagactatcaagactgtggtgattctttaagtggc
aaagcttgtgacgatcaaggacttgattatgatgatgtgggtgtggctcttgaatttaaa
gaagatgatgaggagagtgatcttgatatggtccaggaggaacacgaggaagaggatgaa
gacgctgttgaacctaatgaaactggaggcgaccaggtgggtgtggcaactaacggtaag
gatactagacatgcaaaggagggaacaagtcttaatgttcaggacattgatgcatattgg
ctccagagaaagatatctcaagaatatggacagaagatggatgcacaagagtgccataaa
ctcgcacaagagttgcttaatatacttgctgagggtaatgatagggatgttgagatcaag
ctacttgagcaacttcagtttgaaaagttcaaccttgctaaatttctgctgcaaaaccgt
ctgaaagttgtgtggtgcactcgcttggctagggcaagagaccagaatgagaggaatcat
attgaggagaagatgatggggttgggcccagagttggcagctattgtagaagagttgcat
gtaaaaagagcaacagccaaagaaagggaggagaaacgggagaaagatatcaaagaagaa
gctctacatcttatggatgatgattctggtggtgatggatacagaagcatgagagatgtt
gatgttgatagcgatatagagaatggttggttgaagagtcagcgtcgggtactggacctg
gagagccttgcttttaaccaaggtggtttcatgagggagaataagaagtgtgagcttccc
gatcgctcttgcagaattcgtggcaaggaatatgatgaggttcatgtgccatgggtttct
aaaaagtttgatagtaatgaaaagcttgtgaaaataagcgaaatgccagattgggcccaa
ccggcttttaggggaatgcagcagttgaacagggttcagagcaaagtgtatggcactgct
ctttttaaggcagagaacattcttctttgtgctccaactggtgcagggaagaccaatgtt
gctgtgctcaccatactgcaccagcttgcactgaatatgaatccagatggaacatttaat
catgggaattacaaaattatctatgttgcacctatgaaagccctcgttactgaggttgtg
gataatctatctgaacgcttaaaggattatggagttactgtgaaggaactcagtggggat
cagtcccttagtgggcatgaaatcaaagagactcagatcattgttacaacgccagagaag
tgggatattgtcaccaggaaatcgggagatcgaacttatactcagcttgtgaggcttatt
ataattgacgaaattcatcttcttaatgacaatcgagggcctgtagttgagagtatagtt
gctaggacgcttcggcagattgaaaccacaaaggagcatattcgtctggtgggtttatcg
gcaacactgccaaatgatgaagatgtggcgttatttttgcgggtggatctgaaaaatggg
ttgtttaaatttgaccgcagctacagacctgtgcctctggagcagcagtatataggaatt
aatgtgaaaaaaccgtggcggaggtttcaattgatgaatgatatatgttaccagaaagta
ttagctggtgctggaaaacatcaggtccttatttttgtccattcgaggaaggaaacagca
aaaactgcaagagcaataagggacactgcaatggcaaataataccctcagcagattcttg
aaggaagatagtcaaagttatgaaattcttcagagtcaggttgcacttctcaagaatact
gacctgaaagagttaatgccttatggttttgcaattcatcatgctgggttgacattgggt
gatcgtcacatagttgagaaacaatttcgtttagggaatttgcaagtgctggtttccact
gcaactcttgcctggggtgtgaatttgcctgcgcatactgtcattatcaaaggaacccaa
gtctataatcctgagagaggggcgtggatggagctgagtcctctagatgttatgcagatg
attggtcgtgccgggagacctcaatatgaccaacgtggggagggaattataatcactgga
tacagcgagctgcagtattatcttcgtttgatgaatgagcaattaccaattgaaagccag
tttatctccaaacttgctgatcagctcaatgctgaaattgtgcttgggacggttcagaat
gctagagaagcttgccactggcttggctatacatatttatacatccgcatggttcgtaat
ccgacactgtatggcttaccgcctgatgcccttgcaaaagacttattattagaggagaaa
agagctgacctaatacattctgctgctactatcttggacaagaacaacctgattaagtat
gacaagaaaagtggattcttccaggttactgatttggggcgcattgcaagctactactac
ataacccatggaacaatagctacatataatgagaatttgaagccaacaatgactgatatt
gatctttttcgtctgttttcactgagtgaggagttcaagtatgtcactgttcggcaagac
gagaagatggaactggcaaaacttatggaacgtgtaccgataccggtcaaggaaacatta
gaagatcctaatgcaaagatcaatgttttgttgcaagtttatatatcaaaactaaatctc
gagggtctttctttgacatctgacatggtgtatattacccagagtgctggacgtctccta
cgtgctatttttgagattgttttgaagagggggtgggctcaactgtctgaaaaagctctg
agcttgtctaaaatggtagggaagaggatgtggagtgttcagacacccctccggcagttt
catcaaatttcagaggagattctgacgaagttggagaagaacgatatggtgtgggagagg
tactatgatctatcttcacatgagctaggagagctaattcgtaatcctaaaatgggcaga
caacttcacaagttcgtccatcagttcccaaaactgaatcttagagcccatgttcagcca
atttctcgttctgttctgcaagtcgagctcacggtgacacctgattttcagtggaatgac
aaattgcatcaatatgatgaaccattttggataattttggaagataatgatggtgaaaag
atctttcattatgagtattttcttctgaaaaagctgtatattgataaagaccacacgttg
aacttcactgtgccaatctctgagccagttcccccacagtatttcattcgagtggtttcg
gacaaatggcttgactcgccgactgtgtttcctatatctttcaggtatcttattcttcca
gaaaagtatccaccacctacggagctactggacttgcagcccctcccggtgatggcctta
aggaatccttcttatgaatctttgtatcaggatttcaagcatttcaatccagtgcagact
caggtctttactgttttgtataacacaagtgacaatgtattagttgctgcgcctacagga
agtggaaagaccatatgtgcggagtttgctatattgaggaatcatcttgaagtacctgag
tctacgatgcgtgttgtttatatcgcacctcttgaggctattgccaaggagcggttttgt
gattgggaaagaaagttcggaaaggggcttggtttaccggttgttatgttaacaggggag
acagcattggatcttacgctgcttgagaaaggtcagataattataagtactcctgagaaa
tgggacgctctgtctcgaaggtggaaaaagagaaaatatattcagcatgttagtttgttt
atcgttgatgagcttcatttaattgggggtcagggtggtcctgtattggaggtaattgtc
tctaggatgagatatatttcaagtcaggtcgggaacaagatgaggattgttgcattatca
acttccgttgcaaatgccaaagatcttggggagtgggttggggccagttcatgtggcctt
ttcaactttccgccaaatattcgccctgttccactggagatccacattcaaggggtggat
atattgagttttgaagccagggtgcaggcgatgactaagccaacatacactgccatagtc
cagcatgccaagaacaagaaaccagctatcgtttttgtcccgacccgtaaacatgtccgc
attactgctgtagatctgatagcatactcgcacgtggacaacatgcagagccctgagttc
ctgttagggaagctggaagaactagagccttttgttagccaaatttgtgaggaaactcta
aaggagactttgcgccatggtgttggctacttacatgagggtttaagcagtactgatcag
gagattgtgactcagctttttgaagcgggacggattcaggtatgtgtgatgtctagttca
ttgtgttggggtactccattgaaggcgcatttgattgttgtaatgggcacacaattgtat
gatggacgggaaaattctcatccggattaccccatctctgatctgctccagatgatgggg
cgtggtagccgtcctctgcttgatgatgctggaaagtgtgtgatcttctgtcatgcatcg
cgtaaagagtattacaagaaatatctgtatgaagccattccggttgagagtcattttcaa
catttcttgcatgataatttcaatgcagaagtggatgctggagttattgagaacaagcaa
aatgctgtggattatcttacttggagcttcatgtacaggaggcttccccagaacccgaac
tactacaatctccagggagtgacccacaggcatttatctgatcacctctcagagcttgtt
gaaaacactttgtctgatcttgaagtgagtaaatgcattgaaatagaaaatgagttggat
ctctctcctcttaatcttggtatcattgcttcatactattacatcaattacaccaccatt
gagcgattcagttctctcttggcttccaagacaaagatgaagggtcttattgagatcttg
acttcagcttcagagtacgacttaactcctatacgtcctggtgaagaggacgcagttcgg
agactcatcaatcaccagaggttctcttttgacaatccgatatgtacagaccctcatgtg
aaggcaaatgcgcttcttcaggcgcatttttcaaggcaaaatctcagcggaaacctggca
atggatcagcatgaggtcctcttatctgcaacaagacttctgcaagcaatggtcgatgtg
atatcaaacaatggctgtctgaatcttgctctgttagctatggaagtaagccagatggtg
acacaaggcatgtgggatcgagactccatacttctgcagcttcctcacttcacaaaggac
ttagccaaaaggtgccaagagaatccggggaataacattgaaaccgtatatgatctttta
gaaatggaagacaacaaacgccaagagcttctccaaatgtcagacgctcagcttcttgac
attgccaggttctgcaaccgcttcccgaacattgaccttacatatgaaattgtggggagc
aacgaggtaagccctggaaaagagatcacattgcaggtaatgttggagagagatatggag
ggaaggactgaggtgggacctgtgaacgcaccaagatatcccaagactaaagaagaaggt
tggtggctagtcgttggagagatcaagacgaaccagttgatggccatcaagaaaatctct
ctgcaacggaaggcgaaggtgaagctggagtttgcagtaccaactgaacccggagagaag
tcgtatactctctacttcatgtgcgattcttactttggttgtgaccaggagtactctttc
actgttgatgtcaaagattctgacgccaaagatgatcacatggaagaatga
DBGET
integrated database retrieval system
