Capsella rubella (pink shepherd's-purse): 17887837
Help
Entry
17887837 CDS
T02984
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
17887837
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
crb03021
]
17887837
03019 Messenger RNA biogenesis [BR:
crb03019
]
17887837
Transcription machinery [BR:
crb03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
17887837
Messenger RNA biogenesis [BR:
crb03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
17887837
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf_PCFS4
CID
UPF0444
PTHB1_GAE
Motif
Other DBs
NCBI-GeneID:
17887837
NCBI-ProteinID:
XP_023639702
LinkDB
All DBs
Position
Unknown
AA seq
984 aa
AA seq
DB search
MENSRRPFDRSRDPGPMKKPRLSEEPIRPVNSNLRQFSSQRTLGTAAAVTVPPAASRFRV
SGRETESNIVSDPSREAYQPQPVHPHYELVNQYKSALAELTFNSKPIITNLTIIAGENVH
AAKAVVATICNNILEVPSDQKLPTLYLLDSIVKNIGRDYIKYFGAKLPEVFVKAYRQVDP
PMHSNMRHLFGTWKGVFHPQTLQLIEKELGFNAKSDASAAIVSTARADPQSQRPPHSIHV
NPKYLERQRLQQSGRTKGMVTDVPEIAPNLTRDSDRLERVSSIASGVSWVGSAKVNTIRR
PQRDSLSEPLYEKDIESIAGEYDYASDLPHNSRPVIKKVGSRVTDEGCEKQWYGAMTRGP
DLISDQRDGLLTKSRTSNYGTARLENLESSGPSRNIGVPYDSWKNSEEEEFMWDMHSRLT
ETDVATINPKNELHAPDESERLESENHLLKRPRFSALDPRFDSVNSTNSYSSEQKDSSIF
GHWTTSPRSLHDSEVFSSINANPTAARKGTQPQPRVVGSGILPSLGSGSDRQLPLHDSTS
KQNLAKQDFRRAHSLPQRDPRASRFPAKSQNVPRDDSVRLPSSSTQFKNTNMRELPDASQ
VEIFDSKSATDNAPDLTIASEATGQPNMSDLLEAVMKSGILSNNSTCSAIKESSQDEVNP
GIIALPAASNSKTLPPALPISVAGDNLLACLKVEQSSAPLVSCAASLASGTSVQTSKVNS
KASDPLSCLLSSLVLKGLISASKTELPSATSITKDHSPDHSTNSSISVSVVPSDGQPSVL
VKKGPSTAPKVKGLDAPSETSKTDPQDLIGLKFRADKIREVHPSVISSLFDDLPHLCTSC
GVRLKQKDELDRHLELHEKKKLELSGAKSKCRVWFPKVDDWIAAKSGELEPEYDEALNEP
ESAIEDGPAVPADETQCACILCGELFEDYYSQEMDQWIFKGSSYLTNPPANSEANGPIVH
ARCLTTSSLQSLEVGNSIKQETVE
NT seq
2955 nt
NT seq
+upstream
nt +downstream
nt
atggagaattcgcgtagaccgtttgatagatccagagatccaggtccgatgaagaaaccc
aggctcagcgaggaaccaatccgacctgtaaattccaacttgcggcagttttcatcgcag
agaacgcttggtacggcggcggcggtgacagtaccaccggcggcgtcgagatttcgagtt
agtggcagagaaacggagagtaatattgtcagtgatccgagccgagaggcttaccagcca
cagccggttcatccacattacgagcttgtgaaccagtacaagtcggcactggccgagctc
actttcaactcgaagccaataataacaaaccttacgataattgctggagagaatgtccac
gctgctaaagctgtcgtagccaccatttgcaacaacatcctcgaggtaccaagtgatcag
aagctgccaacactgtacctgttagacagcattgtgaagaacattggaagggattacatt
aagtactttggtgccaagctgcctgaggtatttgttaaggcttacaggcaagttgaccct
cctatgcattctaacatgcggcatctctttggaacctggaaaggagtctttcatccgcaa
acactgcaacttattgagaaagaacttggctttaatgctaaaagtgatgcttcagcagct
attgtatccacagccagagctgatccacaatctcagcgcccgccacatagcatccatgtg
aatcccaaatatctggaaaggcagcgccttcaacagtctggacggacaaaaggaatggtt
actgatgtccctgagatcgcacccaatttgactagggattcagatagactggagagagtt
tcaagcatagcatctggagtctcgtgggtaggttcagctaaagtaaataccattcggcga
cctcaaagagattcacttagcgaacccctctacgagaaagatatcgagtcaatagcaggg
gaatatgattatgcttctgatctacctcataactctagaccggtgattaagaaagttggt
tcaagggttactgatgagggatgtgagaaacaatggtacggagctatgaccaggggtcct
gatctgatttctgaccaaagggatgggttactaaccaaaagcagaacttccaactatggt
acagcgagactagaaaatttggaatcaagtggtccaagtagaaatataggtgtaccttat
gatagttggaaaaactctgaggaagaagagtttatgtgggacatgcactcaaggttaaca
gaaactgatgtagccactatcaacccaaagaatgagcttcatgcaccagatgaatcagag
agactggagtcagaaaaccaccttttaaaacgaccaaggttttcagctctggaccctagg
tttgactcagtgaattcaacaaattcatattccagcgaacaaaaagattcaagtattttt
ggccactggacgacgtctccaagatctttgcatgattcagaagttttttcttctattaat
gcaaaccctactgcagctagaaagggaactcagcctcaacctagggttgttggctctgga
attttgccaagcttaggatctgggtcagatagacagttgcctttacatgattcaacttct
aaacagaatttggccaagcaagattttagaagagctcactcccttcctcaacgtgatcct
agggcttcccgctttccagcaaaatctcaaaatgtccccagggatgactctgtacggctc
ccatcttcaagtactcagtttaaaaacacaaatatgcgtgaattacctgatgcatctcaa
gtggaaatctttgactctaagtcagcaactgacaatgcgcccgaccttactattgcctca
gaagctacaggacaacccaacatgagtgatttgctggaagctgtcatgaagagtggaatc
ctttctaataattcaacatgtagtgcgatcaaagagagttctcaggatgaggttaaccca
gggataatagccctgccggcagcctctaattctaagactttgccaccagcattgccaatt
tcagtggctggtgacaatttattagcttgtttaaaagttgaacaatcctctgcaccactt
gtctcatgtgcagcgtctcttgctagcggaacatcggtacaaacgtcaaaagtgaatagt
aaggcctcagatcctctttcatgcctcttgagctccttagttctaaagggtctgatatct
gcttcaaagacagagcttccatcggccacttccataacgaaggaccatagtcctgatcat
tccaccaatagctctatatctgtatctgtggttccatcagatggtcagccatccgttttg
gttaaaaaagggccatccactgccccaaaggtaaaagggttagatgcaccatctgaaaca
tcaaaaactgatccccaagacctcataggattgaagttcagggcagacaaaatccgtgaa
gttcacccatcggtcattagtagtctctttgatgatcttccacatctctgcacctcctgc
ggcgttcgacttaaacaaaaggatgaacttgatagacacctggaactgcatgaaaagaag
aagctcgagctcagtggcgcaaagagtaaatgtagggtttggtttcctaaagtcgatgac
tggatagcagcaaaatctggagagttagaacctgaatatgatgaagctcttaatgaacct
gagagtgctattgaggatggtccagccgtacctgctgatgagacccaatgcgcatgtata
ttatgtggagaattatttgaggattattacagtcaagaaatggatcaatggatattcaag
ggatcttcttacttgacgaatcctccagccaacagtgaggctaatggtcctatcgttcat
gcgcgttgtttgaccactagttcattgcagagcttggaagttggaaattcaatcaagcag
gaaactgttgagtag
DBGET
integrated database retrieval system
