Capsella rubella (pink shepherd's-purse): 17887857
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Entry
17887857 CDS
T02984
Name
(RefSeq) polygalacturonase
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb00040
Pentose and glucuronate interconversions
crb01100
Metabolic pathways
Module
crb_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
17887857
Enzymes [BR:
crb01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
17887857
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Paralog
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Beta_helix
Pectate_lyase_4
NosD
LSM_int_assoc
Motif
Other DBs
NCBI-GeneID:
17887857
NCBI-ProteinID:
XP_006295606
UniProt:
R0HFU1
LinkDB
All DBs
Position
Unknown
AA seq
394 aa
AA seq
DB search
MANYIYFPSAIILLSIVFFFFVNSSHAMPSFNVQRYGARGDGRTDATNPFLTAWSLACRS
RARAMVYVPRGTYLVRNLVFWGPCKNVITFKIDGTLVAPANYWSIGNSGYWILFAKVNRI
SVYGGIIDARGAGYWSCRKKGSHCPQGARSISFSWCSNVLLSGLTSFNSQNMHVTVHHSS
NVRIQNIRIRAPSGSPNTDGIHVQSSSGVTITGGTIATGDDCIALSQGSRNIWIERVNCG
PGHGISIGSLGDYANEEGVQNVTVTSSVFTKTQNGVRIKTWARPSRGFVKNVVFRNLIMR
NVGNPVIIDQNYCPNGKGCPRQSSGVKISGVTFSNIKGTSSTPIAMRLDCSGSNHCTGLR
LQDIKLTYMRRSSASYCRNVHGRASGVMVPRNCM
NT seq
1185 nt
NT seq
+upstream
nt +downstream
nt
atggccaattacatatattttcctagtgccatcatattattatctattgtcttcttcttc
tttgtcaactcatcacacgcaatgccatcgtttaacgtacaaagatacggagctaggggt
gatgggagaacagatgcgaccaatccctttttgacagcttggtcattagcatgccgttca
cgggctcgggccatggtctacgttccccgaggaacatacttggtcagaaacctagtcttt
tggggtccttgcaagaacgttataactttcaaaattgatggtacactcgtggctccggca
aactactggagtataggtaactccggttactggattctcttcgctaaagtaaaccggatc
tcggtttatggtggcatcattgatgccagaggagctggttattggtcatgtagaaagaaa
ggttcccattgtcctcaaggtgcaaggtctatatcgttcagctggtgcagtaatgttcta
ctaagtggtctaacgtcgtttaatagccaaaacatgcacgtcacggttcatcattcctct
aatgtccggattcaaaacataagaattagggctccaagtggaagccctaacaccgacggt
attcacgttcagtcttcttctggagtcactattactggcggaaccattgcgaccggtgat
gactgcattgctcttagtcaaggatctaggaacatttggatcgaacgggtgaactgtgga
cctggacatggaatcagcattgggagtcttggggattacgctaatgaggaaggtgtacag
aatgtaaccgttacaagctctgttttcaccaagacgcagaacggagtaagaataaagact
tgggctaggccgagcagagggtttgtgaagaatgttgtatttcgaaatctgataatgagg
aatgttggcaatccggtgataatcgatcagaactattgtcctaatggaaaaggctgtcct
cgtcagagctctggtgtgaagataagtggagtgactttttcgaacataaaaggaacatca
tcaacaccaatagctatgagacttgattgtagcggaagcaatcattgcaccggacttagg
ttacaagacattaagctcacttacatgagaagatcatcagcttcttattgtaggaatgtc
catggacgagcatctggagttatggtaccaaggaattgcatgtga
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