Capsella rubella (pink shepherd's-purse): 17887934
Help
Entry
17887934 CDS
T02984
Name
(RefSeq) ABC transporter A family member 1
KO
K05643
ATP-binding cassette, subfamily A (ABC1), member 3
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
17887934
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
crb02000
]
17887934
Transporters [BR:
crb02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
17887934
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
AAA_21
R1_ABCA1
RsgA_GTPase
AAA_29
Tmemb_170
Motif
Other DBs
NCBI-GeneID:
17887934
NCBI-ProteinID:
XP_006296277
UniProt:
R0HUT5
LinkDB
All DBs
Position
Unknown
AA seq
1881 aa
AA seq
DB search
MGTWRRQLKAMLRKNWLLKTRHPFVTSAEILLPTVVMLLLIGVRTRVDTRIHPARSNLEK
DKVVQVGNGISPSFPQVLKLLLAEGEYLAFAPDTDETKNMIDILSLKFPQLRLVTKIFKD
DVELETYITSMHYGVCSDVRNCSNPKIKGAVVFHEQGPHLFDYSIRLNHTWAFAGFPNVK
SIMDTNGPYINDLEMGINTIPTMQYSFSGFLTLQQVVDSFIIFASQQNVDLSLSHSNLGS
AIRFELPWTLFSPSVIRMVPFPTREYTDDEFQSIVKSLMGLLYLLGFLFPISRLISYSVF
EKEQKIREGLYMMGLKDEIFHFSWFITYAFQFALCSGIITACTMGSLFKYSDKTLVFTYF
FLFGVSAIMLSFMISTFFTRAKTAVAVGTLAFLGAFFPYYTVNDESVSMVLKVVASFLSP
TAFALGSINFADYERAHVGLRWSNIWRASSGISFFVCLLMMLLDSILYCVLGLYLDKVLP
RENGVRYPWNFIFSKCFRRKKKDFQNPDPKTNMFPDNNIKATQGEPFDPVIESISLEMRQ
QELDGRCIQVRNLHKVYASRRGNCCAVNSLQLTLYENQILSLLGHNGAGKSTTISMLVGL
LPPTSGDALILGNSIITNMDEIRKELGVCPQHDILFPELTVREHLEMFAVLKGVEEDSLK
STVLDMAEEVGLSDKISTLVRALSGGMKRKLSLGIALIGNSKVIILDEPTSGMDPYSMRL
TWQLIKKIKNGRIILLTTHSMDEAEELGDRIGIMANGSLKCCGSSIFLKHHYGVGYTLTL
VKTSPAVSVAARIVHRHIPSATCVSEVGNEISFKLPLASLPCFENMFREIESCMKNSVDR
SKISEIEDSDYHGIQSYGISVTTLEEVFLRVAGCNLDIEDKPEDIFVSPDTNPPLVCIGS
DQKSIMQPKLLASCNEGAGVIITSVAKACRLIVAAVWTFIGFISMQCCGCSIISRSMFWR
HCKALFIKRARSACRDRKTVAFQFIIPAVFLLFGLLFLQLKPHPDQKSVTLTTAYFNPLL
SGNGGGGPIPFDLSDPIAKEVAQYIEGGWIQPVRNTSYKFPNPKEALADAIDAAGPTLGP
TLLSMSEFLMSSFDQSYQSRYGAILMDGQHPDGSLGYTVLHNSTCQHAGPIFINVMHAAI
LRLATGNKNMTIQTRNHPLPPTKTQRLQRHDLDAFSAAIIVNIAFSFIPASFAVPIVKER
EVKAKHQQLISGVSVLSYWLSTYLWDFISFLFPSTFAMILFYAFGLEQFIGIGRFLPTIL
MLLEYGLAIASSTYCLTFFFTEHSMAQNVILMVHFFSGLILMVISFVMGLIPATASANLY
LKNFFRLSPGFCFSDGLASLALLRQGMKDKSSHGVFEWNVTGASICYLGLESIFYFLVTL
VLELMPVQKVISFSIGEWWQNFKAFKQGAGSCSTEPLLKDSTGAVSADMEDDIDVQEERD
RVMSGLTDNTMLYLQNLRKVYPGGKHQTPKVAVQSLTFSVQAGECFGFLGTNGAGKTTTL
SMLSGEETPTSGTAFVFGKDIVASPRSIRQHIGYCPQFDALFEYLTVKEHLELYARIKGV
VDHRIDNVVMEKLVEFDLLKHSHKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMD
PVAKRFMWDVISRLSTRSGKTAVILTTHSMNEAQALCTRIGIMVGGRLRCIGSPQHLKTR
YGNHLELEVKPNEVSNAELETFCQMIQQWLFNVPPQPRSLLGDLEVCIGVADSITPETAS
ASEISLSPEMVQSVAKFLGNEQRVSTLVPPMPEEHVRFDDQLSEQLFRDGGIPLQIFAEW
WLTKEKFSALDSFIQSSFPGATFKSCNGLSIKYQLPFGEGGLSLADAFGHLETNRNQLGI
AEYSISQSTLETIFNHFAANS
NT seq
5646 nt
NT seq
+upstream
nt +downstream
nt
atgggtacttggaggaggcaattgaaggccatgctccgtaagaattggctcctcaaaact
cgtcatcccttcgttacttcagctgagattttgcttccgacagttgtaatgttgttgttg
ataggcgtgaggactcgggttgacaccagaattcaccccgctcgctccaacttagagaaa
gataaggtcgtccaagtgggcaacggcatctctcctagtttccctcaagttttgaagctt
ttgcttgctgagggggagtatttagcttttgcacctgacactgatgaaacaaagaacatg
atcgacattttgtctctgaagttcccccagctgcggctagttactaaaatttttaaagat
gacgtagaactggaaacttatatcacctctatgcattacggtgtctgcagcgatgtgagg
aactgttcgaatccaaaaataaaaggagcagtggtattccatgaacaaggacctcattta
tttgattatagcatccgcttgaaccacacatgggcattcgcaggattccccaatgtcaag
tcaatcatggatacaaatggaccttatatcaatgatctggaaatggggattaataccata
ccaacaatgcaatacagcttcagcggattcttgactcttcagcaggtggtagactctttc
attatatttgcttcgcaacaaaacgtcgacttgtcattatcacattcaaatcttggttca
gcaatacgctttgagctgccatggactctgtttagcccatcagtgataagaatggttcca
tttccaacccgcgagtatactgatgatgagtttcaatccattgtcaaaagtctaatggga
ctgttgtaccttctgggatttctgtttccaatctcccgtcttatcagctactctgtcttt
gagaaggaacagaaaataagagaaggactttacatgatgggcttgaaggatgagatattt
catttttcgtggtttatcacttatgcattccagttcgcattgtgctctgggattatcaca
gcttgtacgatgggaagtctctttaagtatagtgataagacattagtctttacatacttc
tttttatttggggtcagcgcaatcatgctctcatttatgatatcaacatttttcactcga
gcaaagacagctgtggcagttgggactctagcctttctcggagccttcttcccatactac
actgtaaacgatgaatctgtctccatggtattgaaggtggttgcttcttttctttcgcct
actgcatttgctcttgggtcaatcaactttgctgattatgagcgtgcacatgttggactt
cgttggagcaatatatggcgggcatcgtctggaataagtttttttgtctgcctcttaatg
atgttactcgactctattctttactgcgtacttggtctttatctggacaaggtcctcccc
agggaaaatggtgtgcggtacccatggaacttcatcttcagcaagtgttttaggagaaag
aaaaaagacttccaaaatccagatcccaaaactaatatgtttccggataataatataaag
gctactcagggagagccttttgatcctgttattgaatcaataagcctggaaatgaggcaa
caagaacttgacgggagatgtatacaagttagaaatcttcataaggtctatgcctcaaga
aggggaaattgttgtgcagttaattcattgcaacttacattgtacgagaaccagatactt
tcacttctgggacataatggagctggtaaaagcacaacaatatcaatgcttgttggcctt
cttcccccaacgtctggagatgccctgatacttgggaacagtattataacaaacatggat
gagatacggaaagaactaggtgtttgccctcagcatgacatcctctttccagaactgaca
gttagagaacacttggagatgtttgcggttcttaaaggtgttgaagaagattccttgaag
agcacagttcttgatatggcggaggaagtgggattgtctgataaaattagtacacttgta
cgggcgctttctggaggcatgaagaggaaattgtcacttggaatcgcattgataggaaac
agtaaggtgatcattctcgatgaaccaaccagtggaatggatccgtattcaatgcgtctt
acatggcagttaattaagaaaattaaaaacggtagaataatattgttgacaacacattcc
atggatgaagctgaggaacttggagatcggataggaatcatggctaacgggtctcttaag
tgttgtggcagttcgattttcctgaagcatcactatggggttggttacactcttacgcta
gtaaagacttctccagctgtctctgttgccgcacgtatagttcatcgtcacattccatca
gcaacatgtgtgagtgaggtgggaaacgaaatttctttcaagcttcctttggcttccttg
ccttgttttgaaaatatgttcagagaaattgaaagttgcatgaagaattctgttgacaga
tctaagattagtgagattgaagactcagattatcatggtattcagagttatggtatatct
gtcacgacacttgaagaggtgtttctgagagttgctggctgtaacttggatatcgaggat
aagccggaagatatatttgtctctcctgataccaaccctcctctggtatgcattggatct
gatcagaaaagtattatgcaacctaagttgttagcaagttgtaatgagggcgctggagtt
ataattacctcagttgcaaaagcttgcagattaatagttgctgcagtttggactttcatt
ggattcattagcatgcaatgctgtggttgttccattatctcaaggtcaatgttttggagg
cattgcaaagcattgtttataaaaagagcaagatctgcttgcagagaccgaaaaacagtg
gcattccaattcatcatcccagccgttttcttgctttttggcctactttttcttcagctc
aagccacatcctgatcagaaatccgtaactttgacaactgcatattttaatcctctcctg
agcggtaacggtggtggtggtccgattccttttgatctgtctgacccaattgccaaagag
gttgcacaatatatcgaaggaggctggattcagcctgtgcggaatacttcatataaattt
cctaatccaaaagaggcattggctgatgctattgatgcagcaggtcccacgttggggccc
actctgctttcaatgagtgaatttctgatgtctagttttgatcagtcctaccagtcaagg
tatggggcaattttaatggatggccagcatccagatgggagtttaggatacaccgtgtta
cacaacagtacttgtcagcatgctggtccaatcttcatcaatgttatgcatgctgcgatt
ctccgacttgctacgggtaacaagaatatgacaattcaaacccgaaaccatcctttgccc
ccaacaaaaactcagcgcctacagcgtcatgatttggatgccttttccgctgcaattatt
gttaacattgcgttctcattcatcccggcctcttttgctgttcccattgttaaggagcgg
gaggtgaaagcaaagcatcaacagcttattagtggggtttctgttctttcatactggtta
tcaacatacctatgggatttcatcagtttcttatttccgtcaacatttgcaatgatcctc
ttttatgcttttggtctggaacagtttatcgggataggtcggtttcttcctactatcctt
atgctcctggagtatggcttggcaattgcatcatcaacgtactgtcttacatttttcttc
accgagcatagcatggctcagaatgttattcttatggtccacttcttctctggtcttatc
cttatggttatctcatttgttatgggccttattccagcaactgctagtgcaaatttatat
ctaaagaacttcttcagattatcaccaggattttgtttctctgatggattggcttcatta
gctcttctaaggcagggaatgaaagacaaatctagtcatggggtgttcgaatggaatgtc
actggagcgtccatctgttacctgggtttggagagtatattctacttccttgtgacgctt
gtgcttgagctgatgcctgtccaaaaggtgatctcgttctcaattggggagtggtggcag
aatttcaaagctttcaagcaaggtgctggttcttgttctacagagccacttctcaaggat
tcgactggagccgtttccgctgatatggaggatgacatagacgtgcaagaggaaagagac
agggtaatgtcggggttgacagacaacaccatgctctacttacagaaccttaggaaggtt
tatcctggtggcaaacatcagaccccaaaagtagctgtacagtctttgactttctcggtc
caagcaggagaatgttttggctttttagggacgaatggagctgggaagactactaccttg
tctatgttgtctggagaagaaaccccaactagtgggactgccttcgtctttggcaaagac
atagtagcgagtcccagatctatccgtcagcatattggctactgcccccagttcgatgct
ttattcgagtatttgactgtgaaggagcaccttgaactatatgcaaggatcaaaggagta
gttgatcatcgaattgacaatgtggttatggagaaattagtcgagtttgacttgttgaaa
cattctcacaagccatcgttcacgcttagtggcggaaacaagcgcaaactatccgttgct
attgcaatgattggagatcctcctattgtcatcctcgatgaaccatctacaggtatggat
cctgttgccaaaagattcatgtgggatgtgatatcccgcttgtcgacaaggagtggaaag
acagctgtcattctgactactcatagcatgaatgaagctcaggcactttgcactaggatc
gggatcatggtaggaggccgcctaagatgcataggtagtccacaacacttaaagacacgc
tacggaaaccaccttgagttagaggtcaaacccaacgaagtcagcaatgccgaattggag
acattttgccaaatgatccagcagtggctgtttaacgttcctccgcagcctagaagttta
ctgggtgatctcgaagtttgtataggtgtcgctgactctattactcctgaaacggcttca
gcatcagaaatcagtttgtctccagaaatggtacaaagcgttgccaagtttcttggtaat
gaacagagagtgagtactctcgtacctcccatgcctgaggaacatgtgagattcgatgac
cagttatcagaacaactgtttcgagatggtggcattccacttcaaatatttgcggagtgg
tggctaaccaaagaaaagttttcagcgttggattctttcatacaatcttcatttcctggt
gcaacattcaaaagctgcaatggactgagtattaagtaccagttgccatttggagaagga
ggactgtcacttgcggatgcttttggacaccttgaaacaaacaggaatcagttgggaata
gctgaatacagtataagtcagtccacacttgagaccatattcaaccattttgcagctaac
tcataa
DBGET
integrated database retrieval system
