Capsella rubella (pink shepherd's-purse): 17888137
Help
Entry
17888137 CDS
T02984
Name
(RefSeq) exopolygalacturonase
KO
K01213
galacturan 1,4-alpha-galacturonidase [EC:
3.2.1.67
]
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb00040
Pentose and glucuronate interconversions
crb01100
Metabolic pathways
Module
crb_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
17888137
Enzymes [BR:
crb01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.67 galacturonan 1,4-alpha-galacturonidase
17888137
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Beta_helix
Motif
Other DBs
NCBI-GeneID:
17888137
NCBI-ProteinID:
XP_006295486
UniProt:
R0HFF8
LinkDB
All DBs
Position
Unknown
AA seq
404 aa
AA seq
DB search
MASRFLIVLYALSLFFVLAASTRQYPRQEKVFDVRDYGAYGDSKRDNAVAFTKAWNDACQ
WSSGRSTVYIPAGIFYVSQVTFTGPCKNFITFIVTGTLLAPKNPDYIKQEEWILFKYVDN
LTVTGGGLLDGQGSYSWPLNDCNKNPSCRTLAMNIGFAFVRFSRINGLRSINSKMGHFNF
FSVEDFNITGVTITAPGDSPNTDGIKIGKSNHMHIFNVTIGTGDDCIAILDGTSNLEISD
VRCGPGHGISVGSLGRYKDEKNVQGLTVRDSIFNGTTDGLRIKTWAKSVSEISVSNFLYE
NIQMINVGNPIIIDQQYCPHGQCDSPGKYASHVQIKDVKYHKIWGTSTSKEALKMQCSKT
FPCQDVELSDINLSYVGSDGLVSALCENVGGSIRGKIVPANCEI
NT seq
1215 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctaggtttctgatcgtcttgtatgcgttgtctctcttcttcgtcctcgccgct
tcgacgaggcaatacccacgccaagaaaaagtctttgacgtcagagactacggtgcttac
ggcgacagcaaaagagataacgccgttgcgtttacaaaggcgtggaacgatgcttgccaa
tggagtagtggaagatcaacggtctatattcctgccggaatattctatgtcagtcaagta
acgttcaccggtccttgcaaaaactttattacttttattgtcacaggaacgttactagct
cctaagaatcctgactacatcaaacaagaagagtggatacttttcaagtacgtcgataac
ctcaccgtcactggcggcgggttacttgacggccaaggatcatattcttggccactcaat
gattgtaacaagaaccctagctgtcgtacgctagctatgaacattgggtttgcgttcgtt
agattctcgaggatcaacggcctaagatctatcaacagcaaaatgggtcatttcaacttc
ttctcagtcgaggattttaacattacaggcgttaccatcactgcccccggagatagccct
aataccgacggaatcaagatcgggaaatctaaccatatgcatatcttcaacgtcactatt
ggaaccggcgacgattgtatcgcaatccttgacggaaccagcaatttagaaatctctgat
gtcagatgcggaccagggcacgggattagtgtagggagcctagggagatacaaagacgag
aagaacgttcagggattaaccgtcagagactcgatattcaacggtacaaccgacggttta
cgtatcaaaacatgggctaagtcggtttcggagatctcggtttcaaatttcttgtacgag
aatatccaaatgatcaatgttggaaaccctatcatcattgaccagcagtactgtccacac
gggcaatgtgatagtcctggcaagtatgcgtctcatgttcagatcaaagatgtcaagtac
cacaaaatttgggggacttcgactagcaaagaggctttgaagatgcaatgtagtaaaacg
tttccttgtcaagacgttgagctctcagacatcaacttgagttacgttggaagcgacggg
ctagtctcggctttgtgtgagaacgttggtggttcgatccgtggcaagattgtgccggca
aattgcgagatttga
DBGET
integrated database retrieval system
