Capsella rubella (pink shepherd's-purse): 17888153
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Entry
17888153 CDS
T02984
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH6 isoform X2
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
17888153
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
crb03041
]
17888153
Enzymes [BR:
crb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
17888153
Spliceosome [BR:
crb03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
17888153
Complex C
U4/U6.U5 tri-SnRNP related factors
17888153
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_19
AAA_30
nSTAND3
PWI
T2SSE
AAA_16
SRP54
AAA_7
Flavi_DEAD
AAA_23
Motif
Other DBs
NCBI-GeneID:
17888153
NCBI-ProteinID:
XP_006296554
UniProt:
R0G227
LinkDB
All DBs
Position
Unknown
AA seq
1040 aa
AA seq
DB search
MGSNDLSTWVSDKLMVLLGYSQTAVVKYLIAMAKKSESPDELVRELVACGFSLSGDTRAF
AEEIYARVPRKTAGVNLYQHQEAEAAMLLKKQKTFSLLEADHDEDEGNVEKQYALESAKS
DKTRKRFRKKIEEQEDYDDDEVLIAREDKRNVKRKVSEDDNDGIESEEERLRDQREREEL
EQHLRERDAARTRKLTEPKMSKVEKEGVVRRDSAVDKDTQSLRKFSRQNYVKERVSKKLK
ELKDYLEDESYLFRDEKLTEAEIHDNRYKKAIFELINESTQEEDNVGEYRMPDAYDQDGS
VDQEKRFAVSVQRYRDMGSTEKMNPFAEQEAWEDHQIGNATLKFGAKNKQVSDNYEFVFE
DQIDFIKASVLAGDNYEDLMHAKPSQDSTGKSAFDILQEERKTLPIYSYRDQLLNAVKDH
QVLIIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAMSVAARVAQEMGGKLGHE
VGYSIRFEDCTSEKTILKYMTDGMLLRELLGEPDLGSYSVIIVDEAHERTLHTDILFGLV
KDIARARPDLKLLISSATMDAEKFSDFFDQAPIFNFPGRRYPVDICFTTAPEADYMDAAI
ATVLTIHVKEPLGDVLVFLPGQEEIEAVEENLKNKIRGLGTKIRELIICPIYANLPSELQ
AKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFSKMKSYNPRTGMESLLVTPISK
ASATQRAGRAGRTSAGKCYRLYTAYNYYNDLEDNTVPEIQRTNLASVVLALKSLGIHNLL
NFDFMDPAPAEALIKSLELLFALGALNQLGELTKAGRRMAEFPLDPMLSKMIVVSDKYKC
SDEIISIAAMLSIGPSIFYRPKDKQVHADNAMMNFHVGNVGDHIAMLKIYNSWKETNYST
QWCYENYIQVRSMKRARDIRDQLKGLLERVEIEVSSNLNELDSIRKSIVAGFFPHTAKLQ
KNGSYRTAKHPQTVHIHPASGLSQVLPRWVVYHQLVLTSKEYMRQVTELKPEWLIEIAPH
YYQLKDVEDATSKKMPKTSG
NT seq
3123 nt
NT seq
+upstream
nt +downstream
nt
atggggagcaatgatttgagcacctgggtctcagacaagttgatggttctgctaggctat
tcacaaactgctgttgtgaaatatctaattgcaatggctaaaaaatcagaatcaccagat
gaactcgtgcgtgagttggtggcttgcgggttttctttgtctggtgatacgcgtgccttt
gcagaagaaatttatgccagagttccccggaaaaccgctggtgtgaatctctaccaacat
caagaagcagaggcagcgatgctgttgaagaagcagaaaactttttcccttttggaggct
gatcatgatgaagatgaaggcaatgtagagaaacaatatgctttggaatcagcaaagtca
gataaaacacgaaagaggttcaggaagaaaattgaggaacaggaagactacgacgatgat
gaggtgctgattgctagagaggacaaaaggaatgttaagcgaaaggtgtccgaagacgac
aatgatggcattgagtctgaagaggaaagattacgtgaccaaagggagagagaagaacta
gagcagcacctaagagagcgtgatgctgcacggacacggaagctaacagagccaaaaatg
tcaaaggtagagaaagaaggggttgttcgaagagatagtgctgtagacaaggatacacaa
tccttaaggaagttctcacggcaaaattatgttaaagagagggtttcgaagaaactaaaa
gagctaaaggattatctagaagatgaatcatacctttttagagatgaaaagctcactgaa
gcagaaattcatgataatagatacaagaaagcaatcttcgagctcataaatgaaagtaca
caagaagaagataatgtaggagagtatagaatgccagatgcatatgatcaagatggaagt
gttgatcaggagaagagatttgctgtttctgtacaacgttacagggacatgggttccacg
gagaaaatgaacccctttgcagagcaagaagcttgggaagaccatcagattggaaatgca
acattaaaatttggcgcaaagaataagcaggtctcagacaattacgagtttgtatttgaa
gaccaaatcgacttcataaaagcatctgtgttggctggtgataattatgaagatctaatg
catgctaaaccatctcaagattctactgggaaatcggcttttgatatacttcaggaggag
agaaaaacactgccaatttattcatatcgtgatcaacttcttaatgctgttaaagatcat
caggttcttataattgtgggagaaacgggttctggcaagactacacagataccccaatat
cttcacgaagctggttacacaaagcatggaaaggttggttgtacgcagcctcgaagagtt
gcggctatgagtgtggctgctcgtgttgctcaagagatgggtggtaaacttgggcatgag
gttggctattccattcgatttgaggattgtacgtctgagaaaacaattctgaagtatatg
actgatggaatgcttttgcgtgagttgctcggtgaaccagatctgggcagttacagtgtt
atcatcgtggatgaagcgcatgaaagaactttgcacaccgacatactatttggattagtt
aaggatatagcacgggctcggcctgatctgaagttattgatatccagtgcaaccatggat
gcagagaagttttctgatttctttgaccaagcccctatctttaatttcccaggaagaagg
tatccagttgacatttgctttactactgcacctgaagctgattacatggacgcagcaata
gctactgtgcttacgatacatgtgaaggaaccacttggagatgtattggtcttcctccca
ggtcaagaggaaattgaggccgtagaagagaacttgaagaacaagattagaggtttgggt
acaaagatccgtgaactcattatatgcccaatttacgctaaccttccaagcgaactccaa
gcaaaaatatttgaaccaactcctgaaggggcacggaaagtggtgctagcgacaaatatt
gctgaaacatcattgaccatcgatggtattaagtatgtcattgatccgggctttagcaag
atgaaatcctataaccctagaacagggatggaatcgttgcttgtaacacctatctctaag
gcttcagcgacgcagcgagctggtcgagctggaagaacaagtgcggggaagtgttaccgc
ttatacacggcgtataattattacaatgacttggaggacaataccgtacctgaaattcaa
aggactaatcttgctagtgtggtgcttgctttgaagagtcttggtattcataatctgctg
aactttgacttcatggaccctgcacctgctgaagctcttatcaagtccttagagcttctc
tttgctctgggggctctcaatcagctgggcgaattgactaaagctggtaggcggatggca
gagtttccccttgatccaatgttgtcgaagatgattgttgtttctgacaaatacaaatgc
tccgatgagatcatatccattgctgctatgttgtccatcgggccttctatcttttaccgt
cccaaggacaagcaagttcatgctgacaatgcaatgatgaattttcacgttggaaatgtt
ggtgatcacattgctatgctcaagatttacaattcgtggaaggaaacaaactactcaaca
cagtggtgctatgaaaactatattcaggttcggagtatgaaaagagccagagatatccgt
gatcagttgaagggtcttcttgagagagttgaaatagaagttagctcaaacttgaacgag
ttggattcaattagaaaatccatcgtagctggtttctttccacacaccgccaagctacag
aagaatggatcataccgaacagcgaagcatccccaaaccgtgcacatacatccagcctct
ggcttatctcaggtattgccgagatgggttgtgtatcatcaactagttcttacctctaag
gagtacatgagacaggtaacggagttaaagccagagtggttgattgagatagctccacac
tattatcagcttaaggatgttgaagatgctacatccaagaaaatgcccaaaaccagtggc
tga
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integrated database retrieval system
